eisa

Package: eisa
Version: 1.24.0
Date: 2014-03-26
Title: Expression data analysis via the Iterative Signature Algorithm
Author: Gabor Csardi <csardi.gabor@gmail.com>
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>
Description: The Iterative Signature Algorithm (ISA) is a biclustering
method; it finds correlated blocks (transcription modules) in gene
expression (or other tabular) data. The ISA is capable of finding
overlapping modules and it is resilient to noise. This package
provides a convenient interface to the ISA, using standard
BioConductor data structures; and also contains various
visualization tools that can be used with other biclustering
algorithms.
Depends: isa2, Biobase (>= 2.17.8), AnnotationDbi, methods
Imports: BiocGenerics, Category, genefilter, DBI
Suggests: igraph (>= 0.6), Matrix, GOstats, GO.db, KEGG.db, biclust,
MASS, xtable, ALL, hgu95av2.db, targetscan.Hs.eg.db,
org.Hs.eg.db
License: GPL (>= 2)
biocViews: Classification, Visualization, Microarray, GeneExpression
Collate: AllClasses.R AllGenerics.R ISAExpressionSet-methods.R
ISAModules-methods.R enrichment.R CHR.R GO.R KEGG.R miRNA.R
autil.R autogen.R biclust.R eisa.R viz.R zzz.R
generalenrichment.R
NeedsCompilation: no
Packaged: 2016-05-04 03:23:38 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'eisa' ...
** R
** data
** inst
** preparing package for lazy loading
in method for 'coerce' with signature '"Biclust","ISAModules"': no definition for class "Biclust"
in method for 'coerce' with signature '"ISAModules","Biclust"': no definition for class "Biclust"
** help
*** installing help indices
  converting help for package 'eisa'
    finding HTML links ... done
    ALLModules                              html  
    ISA.CHR                                 html  
    ISA.GO                                  html  
    ISA.KEGG                                html  
    ISA                                     html  
    ISA.html                                html  
    ISA.iterate                             html  
    ISA.miRNA                               html  
    ISA.normalize                           html  
    ISA.sweep                               html  
    ISA.unique                              html  
    ISA2heatmap                             html  
    ISAExpressionSet                        html  
    ISAModules-class                        html  
    ListHyperGParams-class                  html  
    ListHyperGResult-class                  html  
    cond.plot                               html  
    eisa.biclust                            html  
    enrichment                              html  
    exp.plot                                html  
    gograph                                 html  
    mnplot                                  html  
    overlap                                 html  
    profilePlot                             html  
    robustness                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (eisa)
Making 'packages.html' ... done