epigenomix

Package: epigenomix
Type: Package
Title: Epigenetic and gene transcription data normalization and
integration with mixture models
Version: 1.12.0
Date: 2016-02-08
Author: Hans-Ulrich Klein, Martin Schaefer
Maintainer: Hans-Ulrich Klein <h.klein@uni-muenster.de>
Depends: R (>= 3.2.0), methods, Biobase, S4Vectors, IRanges,
GenomicRanges, SummarizedExperiment
Imports: BiocGenerics, MCMCpack, Rsamtools, parallel, GenomeInfoDb,
beadarray
Description: A package for the integrative analysis of RNA-seq or
microarray based gene transcription and histone modification
data obtained by ChIP-seq. The package provides methods for
data preprocessing and matching as well as methods for fitting
bayesian mixture models in order to detect genes with
differences in both data types.
License: LGPL-3
biocViews: ChIPSeq, GeneExpression, DifferentialExpression,
Classification
NeedsCompilation: no
Packaged: 2016-05-04 04:53:55 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'epigenomix' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'epigenomix'
    finding HTML links ... done
    ChIPseqSet-class                        html  
    finding level-2 HTML links ... done

    MixModel-class                          html  
    MixModelBayes-class                     html  
    MixModelML-class                        html  
    MixtureComponent-class                  html  
    bayesMixModel                           html  
    calculateCrossCorrelation               html  
    eSet                                    html  
    fpkm                                    html  
    getAlignmentQuality                     html  
    integrateData                           html  
    mappedReads                             html  
    matchProbeToPromoter                    html  
    mlMixModel                              html  
    normalize                               html  
    normalizeChIP                           html  
    plotChains                              html  
    plotClassification                      html  
    plotComponents                          html  
    summarizeReads                          html  
    transToTSS                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (epigenomix)
Making 'packages.html' ... done