epoc

Package: epoc
Version: 0.2.5-1
Date: 2013-08-22
Encoding: UTF-8
Title: EPoC (Endogenous Perturbation analysis of Cancer)
Author: Rebecka Jornsten, Tobias Abenius, Sven Nelander
Maintainer: Tobias Abenius <Tobias.Abenius@Chalmers.se>
Depends: R (>= 2.12.0), lassoshooting (>= 0.1.4), Matrix, methods,
graph
Imports: irr, elasticnet, survival, Rgraphviz
Suggests: RCytoscape
Description: Estimates sparse matrices A or G using fast lasso regression from mRNA transcript levels Y and CNA profiles U. Two models are provided, EPoC A where
AY + U + R = 0
and EPoC G where
Y = GU + E,
the matrices R and E are so far treated as noise. For details see the reference and the manual page of `lassoshooting'.
License: LGPL-3
Packaged: 2013-08-26 15:37:51 UTC; btobias
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2013-08-26 17:51:58

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'epoc' ...
** package 'epoc' successfully unpacked and MD5 sums checked
** R
** data
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'epoc'
    finding HTML links ... done
    epoc                                    html  
    finding level-2 HTML links ... done

    epoc.bootstrap                          html  
    epoc.survival                           html  
    epoc.validation                         html  
    plapply                                 html  
    plot.EPoC.validation                    html  
    plot.modelsel                           html  
    synth                                   html  
** building package indices
** testing if installed package can be loaded
* DONE (epoc)
Making 'packages.html' ... done