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excursions

Package: excursions
Type: Package
Title: Excursion Sets and Contour Credibility Regions for Random Fields
Version: 2.1.1
Date: 2016-03-10
Author: David Bolin <davidbolin@gmail.com> and Finn Lindgren <finn.lindgren@gmail.com>
Maintainer: David Bolin <davidbolin@gmail.com>
Description: Functions that compute probabilistic excursion sets, contour credibility regions, contour avoiding regions, and simultaneous confidence bands for latent gaussian random processes and fields. The package also contains functions that calculate these quantities for models estimated with the INLA package.
Depends: Matrix, sp, spam
Imports: methods, stats, graphics
Suggests: INLA, testthat, rgeos
Additional_repositories: https://www.math.ntnu.no/inla/R/stable
License: GPL (>= 3)
Copyright: The R package and code, and the main programs, were written
by and are Copyright by David Bolin and Finn Lindgren, and are
redistributable under the GNU Public License, version 3 or
later. The package also includes code from the libraries CAMD
from the SuiteSparse collection of Tim Davis, as well as
functions from the GNU Scientific library and the RngStreams
library by Pierre L'Ecuyer. For details see the COPYRIGHTS
file.
NeedsCompilation: yes
Packaged: 2016-03-10 19:24:56 UTC; davidbolin
Repository: CRAN
Date/Publication: 2016-03-10 23:38:01

● 0 images, 19 functions, 0 datasets
● Reverse Depends: 0

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'excursions' ...
** package 'excursions' successfully unpacked and MD5 sums checked
** libs
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -fopenmp -ISuiteSparse_config -ICAMD/Include -fpic  -g -O2  -c RngStream.c -o RngStream.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -fopenmp -ISuiteSparse_config -ICAMD/Include -fpic  -g -O2  -c gsl_fix.c -o gsl_fix.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -fopenmp -ISuiteSparse_config -ICAMD/Include -fpic  -g -O2  -c integration.cpp -o integration.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -fopenmp -ISuiteSparse_config -ICAMD/Include -fpic  -g -O2  -c qinv.cpp -o qinv.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -fopenmp -ISuiteSparse_config -ICAMD/Include -fpic  -g -O2  -c reordering.cpp -o reordering.o
(cd CAMD && CFLAGS="-g -O2 " CXXFLAGS="-g -O2 " 
	MkInclude="/home/ddbj/local/lib64/R/etc/Makeconf" make library)
make[1]: Entering directory '/tmp/Rtmpu4Vz1R/R.INSTALL5ae140c3a3df/excursions/src/CAMD'
( cd Source    ; make )
make[2]: Entering directory '/tmp/Rtmpu4Vz1R/R.INSTALL5ae140c3a3df/excursions/src/CAMD/Source'
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include    -fpic  -g -O2  -I../Include -DDINT -c camd_aat.c -o camd_i_aat.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include    -fpic  -g -O2  -I../Include -DDINT -c camd_1.c -o camd_i_1.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include    -fpic  -g -O2  -I../Include -DDINT -c camd_2.c -o camd_i_2.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include    -fpic  -g -O2  -I../Include -DDINT -c camd_dump.c -o camd_i_dump.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include    -fpic  -g -O2  -I../Include -DDINT -c camd_postorder.c -o camd_i_postorder.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include    -fpic  -g -O2  -I../Include -DDINT -c camd_defaults.c -o camd_i_defaults.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include    -fpic  -g -O2  -I../Include -DDINT -c camd_order.c -o camd_i_order.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include    -fpic  -g -O2  -I../Include -DDINT -c camd_control.c -o camd_i_control.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include    -fpic  -g -O2  -I../Include -DDINT -c camd_info.c -o camd_i_info.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include    -fpic  -g -O2  -I../Include -DDINT -c camd_valid.c -o camd_i_valid.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include    -fpic  -g -O2  -I../Include -DDINT -c camd_preprocess.c -o camd_i_preprocess.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include    -fpic  -g -O2  -I../Include -DDLONG -c camd_aat.c -o camd_l_aat.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include    -fpic  -g -O2  -I../Include -DDLONG -c camd_1.c -o camd_l_1.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include    -fpic  -g -O2  -I../Include -DDLONG -c camd_2.c -o camd_l_2.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include    -fpic  -g -O2  -I../Include -DDLONG -c camd_dump.c -o camd_l_dump.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include    -fpic  -g -O2  -I../Include -DDLONG -c camd_postorder.c -o camd_l_postorder.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include    -fpic  -g -O2  -I../Include -DDLONG -c camd_defaults.c -o camd_l_defaults.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include    -fpic  -g -O2  -I../Include -DDLONG -c camd_order.c -o camd_l_order.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include    -fpic  -g -O2  -I../Include -DDLONG -c camd_control.c -o camd_l_control.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include    -fpic  -g -O2  -I../Include -DDLONG -c camd_info.c -o camd_l_info.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include    -fpic  -g -O2  -I../Include -DDLONG -c camd_valid.c -o camd_l_valid.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include    -fpic  -g -O2  -I../Include -DDLONG -c camd_preprocess.c -o camd_l_preprocess.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include    -fpic  -g -O2  -I../Include -c camd_global.c -o camd_global.o
ar -rcs ../../CAMD.a camd_i_aat.o camd_i_1.o camd_i_2.o camd_i_dump.o camd_i_postorder.o camd_i_defaults.o camd_i_order.o camd_i_control.o camd_i_info.o camd_i_valid.o camd_i_preprocess.o camd_l_aat.o camd_l_1.o camd_l_2.o camd_l_dump.o camd_l_postorder.o camd_l_defaults.o camd_l_order.o camd_l_control.o camd_l_info.o camd_l_valid.o camd_l_preprocess.o camd_global.o
make[2]: Leaving directory '/tmp/Rtmpu4Vz1R/R.INSTALL5ae140c3a3df/excursions/src/CAMD/Source'
make[1]: Leaving directory '/tmp/Rtmpu4Vz1R/R.INSTALL5ae140c3a3df/excursions/src/CAMD'
(cd SuiteSparse_config && CFLAGS="-g -O2 " CXXFLAGS="-g -O2 " 
	MkInclude="/home/ddbj/local/lib64/R/etc/Makeconf" make library)
make[1]: Entering directory '/tmp/Rtmpu4Vz1R/R.INSTALL5ae140c3a3df/excursions/src/SuiteSparse_config'
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -DNTIMER -I/usr/local/include    -fpic  -g -O2  -c SuiteSparse_config.c -o SuiteSparse_config.o
ar -rcs ../SuiteSparse_config.a SuiteSparse_config.o
make[1]: Leaving directory '/tmp/Rtmpu4Vz1R/R.INSTALL5ae140c3a3df/excursions/src/SuiteSparse_config'
g++ -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o excursions.so RngStream.o gsl_fix.o integration.o qinv.o reordering.o CAMD.a SuiteSparse_config.a -lm -fopenmp -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/excursions/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'excursions'
    finding HTML links ... done
    continuous                              html  
    contourmap                              html  
    contourmap.colors                       html  
    contourmap.inla                         html  
    contourmap.mc                           html  
    excursions                              html  
    excursions.inla                         html  
    excursions.mc                           html  
    excursions.variances                    html  
    gaussint                                html  
    require.nowarnings                      html  
    simconf                                 html  
    simconf.inla                            html  
    simconf.mc                              html  
    simconf.mixture                         html  
    submesh.grid                            html  
    submesh.mesh                            html  
    tricontour                              html  
    tricontourmap                           html  
** building package indices
** testing if installed package can be loaded
* DONE (excursions)
Making 'packages.html' ... done