flowQ

Package: flowQ
Type: Package
Title: Quality control for flow cytometry
Version: 1.32.0
Author: R. Gentleman, F. Hahne, J. Kettman, N. Le Meur, N. Gopalakrishnan
Maintainer: Mike Jiang <wjiang2@fhcrc.org>
Description: Provides quality control and quality assessment tools for flow
cytometry data.
Depends: R (>= 2.10.0), methods, BiocGenerics, outliers, lattice,
flowViz, mvoutlier, bioDist, parody, RColorBrewer, latticeExtra
Imports: methods, BiocGenerics, geneplotter, flowCore, flowViz, IRanges
Suggests: flowStats
SystemRequirements: ImageMagick
License: Artistic-2.0
biocViews: Infrastructure, FlowCytometry, CellBasedAssays
NeedsCompilation: no
Packaged: 2016-05-04 02:59:15 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'flowQ' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'flowQ'
    finding HTML links ... done
    aggregatorList-class                    html  
    binaryAggregator-class                  html  
    discreteAggregator-class                html  
    evaluateProcess                         html  
    factorAggregator-class                  html  
    flowQ-package                           html  
    locateDuplicatedParameters              html  
    normalizeSets                           html  
    numericAggregator-class                 html  
    outlier-class                           html  
    outlierResult-class                     html  
    outliers-methods                        html  
    preProcessFlowList                      html  
    qData                                   html  
    qaAggregator-class                      html  
    qaGraph-class                           html  
    qaGraphList-class                       html  
    qaProcess-class                         html  
    qaProcess.2DStatsPlot                   html  
    qaProcess.BoundaryPlot                  html  
    qaProcess.DensityPlot                   html  
    qaProcess.ECDFPlot                      html  
    qaProcess.KLDistPlot                    html  
    qaProcess.cellnumber                    html  
    qaProcess.marginevents                  html  
    qaProcess.timeflow                      html  
Rd warning: /tmp/RtmpBvyDZd/R.INSTALL2cd213fb9047/flowQ/man/qaProcess.timeflow.Rd:34: file link 'timeLinePlot-methods' in package 'flowViz' does not exist and so has been treated as a topic
    qaProcess.timeline                      html  
Rd warning: /tmp/RtmpBvyDZd/R.INSTALL2cd213fb9047/flowQ/man/qaProcess.timeline.Rd:40: file link 'timeLinePlot-methods' in package 'flowViz' does not exist and so has been treated as a topic
    qaProcessFrame-class                    html  
    qaProcessSummary-class                  html  
    qaReport                                html  
    rangeAggregator-class                   html  
    stringAggregator-class                  html  
    txtFormatQAObject                       html  
    validProcess                            html  
    writeQAReport                           html  
    writeQATextReport                       html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (flowQ)
Making 'packages.html' ... done