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Last data update: 2014.03.03

gRbase

Package: gRbase
Version: 1.7-5
Title: A Package for Graphical Modelling in R
Author: Søren Højsgaard <sorenh@math.aau.dk>
Maintainer: Søren Højsgaard <sorenh@math.aau.dk>
Description: The 'gRbase' package provides general features
which are used by other graphical modelling packages, in particular
by the packages 'gRain', 'gRim' and 'gRc'.
.
'gRbase' contains several datasets relevant for use in connection with
graphical models. Almost all datasets used in the book Graphical
Models with R (2012) are contained in 'gRbase'.
.
'gRbase' implements several graph algorithms (based mainly on
representing graphs as adjacency matrices - either in the form
of a standard matrix or a sparse matrix). Some graph
algorithms are:
(i) maximum cardinality search (for marked and unmarked graphs).
(ii) moralize.
(iii) triangulate.
(iv) junction tree.
.
'gRbase' facilitates array operations,
.
'gRbase' implements functions for testing for conditional independence.
.
'gRbase' illustrates how hierarchical log-linear models may be
implemented and describes concept of graphical meta
data. These features, however, are not maintained anymore and
remains in 'gRbase' only because there exists a paper describing
these facilities: A Common Platform for Graphical Models in R:
The 'gRbase' Package, Journal of Statistical Software, Vol 14,
No 17, 2005.
.
NOTICE Proper functionality of 'gRbase' requires that the packages graph,
'Rgraphviz' and 'RBGL' are installed from 'bioconductor'; for
installation instructions please refer to the webpage given below.
License: GPL (>= 2)
URL: http://people.math.aau.dk/~sorenh/software/gR/
ByteCompile: Yes
Encoding: latin1
Depends: R (>= 3.0.2), methods
Imports: Matrix, RBGL, igraph, graph, Rcpp (>= 0.11.1)
Suggests: Rgraphviz, microbenchmark
LinkingTo: Rcpp (>= 0.11.1), RcppArmadillo, RcppEigen
NeedsCompilation: yes
Packaged: 2016-02-20 05:50:35 UTC; sorenh
Repository: CRAN
Date/Publication: 2016-02-20 08:55:15

● 0 images, 38 functions, 16 datasets
● Reverse Depends: 5

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'gRbase' ...
** package 'gRbase' successfully unpacked and MD5 sums checked
** libs
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include" -I"/home/ddbj/local/lib64/R/library/RcppEigen/include"   -fpic  -g -O2  -c RcppExports.cpp -o RcppExports.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include" -I"/home/ddbj/local/lib64/R/library/RcppEigen/include"   -fpic  -g -O2  -c _g_mcsMAT.cpp -o _g_mcsMAT.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include" -I"/home/ddbj/local/lib64/R/library/RcppEigen/include"   -fpic  -g -O2  -c _g_mcsMAT2.cpp -o _g_mcsMAT2.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include" -I"/home/ddbj/local/lib64/R/library/RcppEigen/include"   -fpic  -g -O2  -c _g_moralizeMAT.cpp -o _g_moralizeMAT.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include" -I"/home/ddbj/local/lib64/R/library/RcppEigen/include"   -fpic  -g -O2  -c _g_rip-cliques.cpp -o _g_rip-cliques.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include" -I"/home/ddbj/local/lib64/R/library/RcppEigen/include"   -fpic  -g -O2  -c _g_topoSortMAT.cpp -o _g_topoSortMAT.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include" -I"/home/ddbj/local/lib64/R/library/RcppEigen/include"   -fpic  -g -O2  -c _g_triangulateMAT.cpp -o _g_triangulateMAT.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include" -I"/home/ddbj/local/lib64/R/library/RcppEigen/include"   -fpic  -g -O2  -c _m_MAT2ftM.cpp -o _m_MAT2ftM.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include" -I"/home/ddbj/local/lib64/R/library/RcppEigen/include"   -fpic  -g -O2  -c _m_isadjMAT.cpp -o _m_isadjMAT.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include" -I"/home/ddbj/local/lib64/R/library/RcppEigen/include"   -fpic  -g -O2  -c _m_matrix2dgCMatrix.cpp -o _m_matrix2dgCMatrix.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include" -I"/home/ddbj/local/lib64/R/library/RcppEigen/include"   -fpic  -g -O2  -c _m_misc.cpp -o _m_misc.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include" -I"/home/ddbj/local/lib64/R/library/RcppEigen/include"   -fpic  -g -O2  -c _m_rowmat2list.cpp -o _m_rowmat2list.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include" -I"/home/ddbj/local/lib64/R/library/RcppEigen/include"   -fpic  -g -O2  -c _m_ugdag2MAT.cpp -o _m_ugdag2MAT.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include" -I"/home/ddbj/local/lib64/R/library/RcppEigen/include"   -fpic  -g -O2  -c _t_tableCell.cpp -o _t_tableCell.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include" -I"/home/ddbj/local/lib64/R/library/RcppEigen/include"   -fpic  -g -O2  -c _t_tableClass.cpp -o _t_tableClass.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include" -I"/home/ddbj/local/lib64/R/library/RcppEigen/include"   -fpic  -g -O2  -c _t_tableCore.cpp -o _t_tableCore.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include" -I"/home/ddbj/local/lib64/R/library/RcppEigen/include"   -fpic  -g -O2  -c _u_utility.cpp -o _u_utility.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include" -I"/home/ddbj/local/lib64/R/library/RcppEigen/include"   -fpic  -g -O2  -c _utils_print.c -o _utils_print.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include" -I"/home/ddbj/local/lib64/R/library/RcppEigen/include"   -fpic  -g -O2  -c allSubsets.cpp -o allSubsets.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include" -I"/home/ddbj/local/lib64/R/library/RcppEigen/include"   -fpic  -g -O2  -c c-arrayops.c -o c-arrayops.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include" -I"/home/ddbj/local/lib64/R/library/RcppEigen/include"   -fpic  -g -O2  -c c-combnPrimC.c -o c-combnPrimC.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include" -I"/home/ddbj/local/lib64/R/library/RcppEigen/include"   -fpic  -g -O2  -c c-setops.c -o c-setops.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include" -I"/home/ddbj/local/lib64/R/library/RcppEigen/include"   -fpic  -g -O2  -c c-utilities.c -o c-utilities.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include" -I"/home/ddbj/local/lib64/R/library/RcppEigen/include"   -fpic  -g -O2  -c combnC.c -o combnC.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include" -I"/home/ddbj/local/lib64/R/library/RcppEigen/include"   -fpic  -g -O2  -c names2pairsM.cpp -o names2pairsM.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include" -I"/home/ddbj/local/lib64/R/library/RcppEigen/include"   -fpic  -g -O2  -c solveSPD.cpp -o solveSPD.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include" -I"/home/ddbj/local/lib64/R/library/RcppEigen/include"   -fpic  -g -O2  -c toBeRemoved.cpp -o toBeRemoved.o
g++ -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o gRbase.so RcppExports.o _g_mcsMAT.o _g_mcsMAT2.o _g_moralizeMAT.o _g_rip-cliques.o _g_topoSortMAT.o _g_triangulateMAT.o _m_MAT2ftM.o _m_isadjMAT.o _m_matrix2dgCMatrix.o _m_misc.o _m_rowmat2list.o _m_ugdag2MAT.o _t_tableCell.o _t_tableClass.o _t_tableCore.o _u_utility.o _utils_print.o allSubsets.o c-arrayops.o c-combnPrimC.o c-setops.o c-utilities.o combnC.o names2pairsM.o solveSPD.o toBeRemoved.o -L/home/ddbj/local/lib64/R/lib -lRlapack -L/home/ddbj/local/lib64/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/gRbase/libs
** R
** data
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'gRbase'
    finding HTML links ... done
    DATA-BodyFat                            html  
    DATA-Nutrimouse                         html  
    DATA-ashtrees                           html  
    DATA-breastcancer                       html  
    DATA-cad                                html  
    DATA-carcass                            html  
    DATA-chestSim                           html  
    DATA-dietox                             html  
    DATA-dumping                            html  
    DATA-lizard                             html  
    DATA-mathmark                           html  
    DATA-mildew                             html  
    DATA-milkcomp                           html  
    DATA-rats                               html  
    DATA-reinis                             html  
    DATA-wine                               html  
    GraphAlgo-coerce                        html  
    GraphAlgo-edgeList                      html  
    GraphAlgo-getClique                     html  
    GraphAlgo-glist2adjMAT                  html  
    GraphAlgo-is-graph                      html  
    GraphAlgo-isGraphical                   html  
    GraphAlgo-mcs                           html  
    GraphAlgo-minimalTriang                 html  
    GraphAlgo-moralize                      html  
    GraphAlgo-mpd                           html  
    GraphAlgo-operations1                   html  
    GraphAlgo-querygraph                    html  
    GraphAlgo-randomDag                     html  
    GraphAlgo-rip                           html  
    GraphAlgo-topoSort                      html  
    GraphAlgo-triangulate                   html  
    GraphAlgo-ugdag                         html  
    GraphAlgo-vpar                          html  
    ZOLD-gModel                             html  
    ZOLD-gRfit                              html  
    ZOLD-gmData                             html  
    ZOLD-hllm                               html  
    ZOLD-validVarTypes                      html  
    array-parray                            html  
    array-simulateArray                     html  
    array-tabMult                           html  
    array-table-operations                  html  
    arrayCombine                            html  
    arraypack-internal                      html  
    combnPrim                               html  
    compareModels                           html  
    compile-propagate                       html  
    cov2pcor                                html  
    gRbase-internal                         html  
    gRbase-utilities                        html  
    gRbase                                  html  
    iplot                                   html  
    removeRedundant                         html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (gRbase)
Making 'packages.html' ... done