Last data update: 2014.03.03
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gaselect
Package: gaselect
Type: Package
Title: Genetic Algorithm (GA) for Variable Selection from
High-Dimensional Data
Version: 1.0.5
Date: 2015-02-10
Author: David Kepplinger
Maintainer: David Kepplinger <david.kepplinger@gmail.com>
Description: Provides a genetic algorithm for finding variable
subsets in high dimensional data with high prediction performance. The
genetic algorithm can use ordinary least squares (OLS) regression models or
partial least squares (PLS) regression models to evaluate the prediction
power of variable subsets. By supporting different cross-validation
schemes, the user can fine-tune the tradeoff between speed and quality of
the solution.
License: GPL (>= 2)
NeedsCompilation: yes
Depends: R (>= 3.0.2), methods (>= 2.10.0)
Imports: Rcpp (>= 0.10.5)
LinkingTo: Rcpp (>= 0.10.5), RcppArmadillo (>= 0.4.000)
Collate: 'Evaluator.R' 'GenAlgControl.R' 'formatSegmentation.R'
'evaluate.R' 'fitness.R' 'genAlg.R' 'getEvalFun.R' 'subsets.R'
'toCControlList.R' 'validData.R'
Suggests: chemometrics
Repository: CRAN
Date/Publication: 2015-02-12 17:45:27
Install log
* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'gaselect' ...
** package 'gaselect' successfully unpacked and MD5 sums checked
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking how to run the C++ preprocessor... g++ -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for stdint.h... (cached) yes
checking for inttypes.h... (cached) yes
checking limits.h usability... yes
checking limits.h presence... yes
checking for limits.h... yes
checking climits usability... yes
checking climits presence... yes
checking for climits... yes
checking whether g++ supports C++11 features by default... no
checking whether g++ supports C++11 features with -std=c++11... yes
Type unsigned long long is supported
uint16_t and unit8_t are available in stdint.h
uint16_t and unit8_t are available in inttypes.h
Found builtin CTZ method (for unsigned long)
Found builtin CTZ method (for unsigned long long)
checking for ffsl... yes
checking for ffsll... yes
Found builtin popcount method (for unsigned long)
Found builtin popcount method (for unsigned long long)
checking pthread.h usability... yes
checking pthread.h presence... yes
checking for pthread.h... yes
configure: creating ./config.status
config.status: creating src/Makevars
config.status: creating src/autoconfig.h
** libs
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -pthread -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include" -D__STDC_LIMIT_MACROS -std=c++11 -fpic -g -O2 -c BICEvaluator.cpp -o BICEvaluator.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -pthread -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include" -D__STDC_LIMIT_MACROS -std=c++11 -fpic -g -O2 -c Chromosome.cpp -o Chromosome.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -pthread -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include" -D__STDC_LIMIT_MACROS -std=c++11 -fpic -g -O2 -c GenAlg.cpp -o GenAlg.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -pthread -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include" -D__STDC_LIMIT_MACROS -std=c++11 -fpic -g -O2 -c LMEvaluator.cpp -o LMEvaluator.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -pthread -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include" -D__STDC_LIMIT_MACROS -std=c++11 -fpic -g -O2 -c Logger.cpp -o Logger.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -pthread -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include" -D__STDC_LIMIT_MACROS -std=c++11 -fpic -g -O2 -c MultiThreadedPopulation.cpp -o MultiThreadedPopulation.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -pthread -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include" -D__STDC_LIMIT_MACROS -std=c++11 -fpic -g -O2 -c PLS.cpp -o PLS.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -pthread -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include" -D__STDC_LIMIT_MACROS -std=c++11 -fpic -g -O2 -c PLSEvaluator.cpp -o PLSEvaluator.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -pthread -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include" -D__STDC_LIMIT_MACROS -std=c++11 -fpic -g -O2 -c PLSSimpls.cpp -o PLSSimpls.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -pthread -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include" -D__STDC_LIMIT_MACROS -std=c++11 -fpic -g -O2 -c RNG.cpp -o RNG.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -pthread -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include" -D__STDC_LIMIT_MACROS -std=c++11 -fpic -g -O2 -c ShuffledSet.cpp -o ShuffledSet.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -pthread -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include" -D__STDC_LIMIT_MACROS -std=c++11 -fpic -g -O2 -c SingleThreadPopulation.cpp -o SingleThreadPopulation.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -pthread -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include" -D__STDC_LIMIT_MACROS -std=c++11 -fpic -g -O2 -c UserFunEvaluator.cpp -o UserFunEvaluator.o
g++ -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o gaselect.so BICEvaluator.o Chromosome.o GenAlg.o LMEvaluator.o Logger.o MultiThreadedPopulation.o PLS.o PLSEvaluator.o PLSSimpls.o RNG.o ShuffledSet.o SingleThreadPopulation.o UserFunEvaluator.o -L/home/ddbj/local/lib64/R/lib -lRlapack -L/home/ddbj/local/lib64/R/lib -lRblas -lgfortran -lm -lquadmath -pthread -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/gaselect/libs
** R
** preparing package for lazy loading
** help
*** installing help indices
converting help for package 'gaselect'
finding HTML links ... done
GenAlg-class html
GenAlg-constructor html
GenAlgControl-class html
GenAlgControl-constructor html
GenAlgEvaluator-class html
GenAlgFitEvaluator-class html
GenAlgFitEvaluator-constructor html
GenAlgLMEvaluator-class html
GenAlgLMEvaluator-constructor html
GenAlgPLSEvaluator-class html
GenAlgPLSEvaluator-constructor html
GenAlgUserEvaluator-class html
GenAlgUserEvaluator-constructor html
evaluate-methods html
fitness html
fitnessEvolution html
formatSegmentation-methods html
getEvalFun-methods html
subsets html
toCControlList-methods html
trueFitnessVal-methods html
validData-methods html
** building package indices
** testing if installed package can be loaded
* DONE (gaselect)
Making 'packages.html' ... done
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