gcrma

Package: gcrma
Title: Background Adjustment Using Sequence Information
Version: 2.44.0
Author: Jean(ZHIJIN) Wu, Rafael Irizarry
with contributions from
James MacDonald <jmacdon@med.umich.edu>
Jeff Gentry
Description: Background adjustment using sequence information
Maintainer: Z. Wu <zwu@stat.brown.edu>
License: LGPL
Depends: R (>= 2.6.0), affy (>= 1.23.2), graphics, methods, stats,
utils
Imports: Biobase, affy (>= 1.23.2), affyio (>= 1.13.3), XVector,
Biostrings (>= 2.11.32), splines, BiocInstaller
Suggests: affydata, tools, splines, hgu95av2cdf, hgu95av2probe
biocViews: Microarray, OneChannel, Preprocessing
NeedsCompilation: yes
Packaged: 2016-05-04 02:38:37 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'gcrma' ...
** libs
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c baseProfile.c -o baseProfile.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c computeAffinities.c -o computeAffinities.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c postmean.c -o postmean.o
gcc -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o gcrma.so baseProfile.o computeAffinities.o postmean.o -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/gcrma/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'gcrma'
    finding HTML links ... done
    affinity.spline.coefs                   html  
    bg.adjust.affinities                    html  
    bg.adjust.gcrma                         html  
    bg.parameters.ns                        html  
    compute.affinities                      html  
    fast.bkg                                html  
    gcrma                                   html  
    gcrma.engine                            html  
    gcrma.engine2                           html  
    getCDF                                  html  
    justGCRMA                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (gcrma)
Making 'packages.html' ... done