gdm

Package: gdm
Type: Package
Title: Functions for Generalized Dissimilarity Modeling
Version: 1.2.3
Date: 2016-04-15
Author: Glenn Manion, Matthew Lisk, Simon Ferrier, Diego Nieto-Lugilde, Matthew C. Fitzpatrick
Maintainer: Matthew C. Fitzpatrick <mfitzpatrick@al.umces.edu>
Description: A toolkit with functions to fit, plot, and summarize Generalized Dissimilarity Models.
License: GPL-2
Depends: R (>= 2.15.2), raster, foreach, doParallel, parallel
LinkingTo: Rcpp
Imports: Rcpp (>= 0.10.4), reshape2, vegan
Suggests: R.rsp
VignetteBuilder: R.rsp
NeedsCompilation: yes
Packaged: 2016-04-15 19:36:47 UTC; mlisk
Repository: CRAN
Date/Publication: 2016-04-16 04:54:18

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'gdm' ...
** package 'gdm' successfully unpacked and MD5 sums checked
** libs
g++ -std=c++11 -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2 -c Gdmlib.cpp -o Gdmlib.o
Gdmlib.cpp: In function 'void GDM_FitFromTable(char**, double*, int*, int*, int*, int*, int*, double*, double*, double*, double*, double*, double*, double*, double*, double*)':
Gdmlib.cpp:1673:58: warning: ignoring return value of 'ssize_t write(int, const void*, size_t)', declared with attribute warn_unused_result [-Wunused-result]
   write( h, &pPredData[nThis], nRows * sizeof( double ) );
                                                          ^
In file included from /usr/include/string.h:635:0,
                 from GDM_Globals.h:37,
                 from stdafx.h:17,
                 from Gdmlib.cpp:5:
In function 'char* strncat(char*, const char*, size_t)',
    inlined from 'void GDM_FitFromTable(char**, double*, int*, int*, int*, int*, int*, double*, double*, double*, double*, double*, double*, double*, double*, double*)' at Gdmlib.cpp:1661:45:
/usr/include/x86_64-linux-gnu/bits/string3.h:156:71: warning: call to char* __builtin___strncat_chk(char*, const char*, long unsigned int, long unsigned int) might overflow destination buffer
   return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest));
                                                                       ^
g++ -std=c++11 -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2 -c Message.cpp -o Message.o
g++ -std=c++11 -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2 -c NNLSDoubleCore.cpp -o NNLSDoubleCore.o
g++ -std=c++11 -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2 -c NNLS_Double.cpp -o NNLS_Double.o
NNLS_Double.cpp: In function 'double* WeightedNNLSRegression(char*, double*, int, int, double*, double*, double*)':
NNLS_Double.cpp:930:62: warning: ignoring return value of 'ssize_t read(int, void*, size_t)', declared with attribute warn_unused_result [-Wunused-result]
   read( h, pEnvDataMatrix, nRows * nCols * sizeof( double ) );
                                                              ^
g++ -std=c++11 -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2 -c dllmain.cpp -o dllmain.o
g++ -std=c++11 -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2 -c stdafx.cpp -o stdafx.o
g++ -std=c++11 -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o gdm.so Gdmlib.o Message.o NNLSDoubleCore.o NNLS_Double.o dllmain.o stdafx.o -L/home/ddbj/local/lib64/R/lib -lR
Gdmlib.o: In function `GDM_FitFromTable':
/tmp/RtmpncZrJK/R.INSTALL7e4f870689/gdm/src/Gdmlib.cpp:1653: warning: the use of `tempnam' is dangerous, better use `mkstemp'
installing to /home/ddbj/local/lib64/R/library/gdm/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'gdm'
    finding HTML links ... done
    createsitepair                          html  
    formatsitepair                          html  
    gd.varImp                               html  
    gdm-package                             html  
    gdm                                     html  
    gdm.transform                           html  
    gdmDissim                               html  
    gdmExpData                              html  
    isplineExtract                          html  
    permutateSitePair                       html  
Rd warning: /tmp/RtmpncZrJK/R.INSTALL7e4f870689/gdm/man/permutateSitePair.Rd:37: missing file link 'gdm.varImp'
    permutateVarSitePair                    html  
Rd warning: /tmp/RtmpncZrJK/R.INSTALL7e4f870689/gdm/man/permutateVarSitePair.Rd:37: missing file link 'gdm.varImp'
    plot.gdm                                html  
    plotUncertainty                         html  
    predict.gdm                             html  
    removeSitesFromSitePair                 html  
    stackedVars                             html  
    summary.gdm                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (gdm)
Making 'packages.html' ... done