geecc

Package: geecc
Type: Package
Title: Gene set Enrichment analysis Extended to Contingency Cubes
Version: 1.6.0
Date: 2014-12-31
Author: Markus Boenn
Maintainer: Markus Boenn <markus.boenn@ufz.de>
Description: Use log-linear models to perform hypergeometric and chi-squared tests for gene set enrichments for two (based on contingency tables) or three categories (contingency cubes). Categories can be differentially expressed genes, GO terms, sequence length, GC content, chromosmal position, phylostrata, ....
License: GPL (>= 2)
Depends: R (>= 3.0.0), methods
Imports: MASS, hypergea (>= 1.2.3), gplots
Suggests: hgu133plus2.db, GO.db, AnnotationDbi
biocViews: BiologicalQuestion, GeneSetEnrichment, WorkflowStep, GO,
StatisticalMethod, GeneExpression, Transcription, RNASeq,
Microarray
NeedsCompilation: no
Packaged: 2016-05-04 05:45:49 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'geecc' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'geecc'
    finding HTML links ... done
    GO2list                                 html  
    concub-class                            html  
    concubfilter-class                      html  
    filterConCub                            html  
    geecc-package                           html  
    marioni                                 html  
    plotConCub                              html  
    finding level-2 HTML links ... done

    runConCub                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (geecc)
Making 'packages.html' ... done