geneListPie

Package: geneListPie
Type: Package
Title: Profiling a gene list into GOslim or KEGG function pie
Version: 1.0
Date: 2009-10-06
Author: Xutao Deng
Maintainer: Xutao Deng <xutaodeng@gmail.com>
Description: "geneListPie" package is for mapping a gene list to
function categories defined in GOSlim or Kegg. The results can
be plotted as a pie chart to provide a quick view of the genes
distribution of the gene list among the function categories.
The gene list must contain a list of gene symbols. The package
contains a set of pre-processed gene sets obtained from Gene
Ontology and MSigDB including human, mouse, rat and yeast. To
provide a high level concise view, only GO slim and kegg are
provided. The gene sets are regulared updated. User can also
use customized gene sets. User can use the R Pie() or Pie3D()
function for plotting the pie chart. Users can also choose to
output the gene function mapping results and use external
software such as Excel(R) for ploting.
Suggests: plotrix
License: GPL-3
Packaged: 2012-07-23 09:53:29 UTC; ripley
Repository: CRAN
Date/Publication: 2012-07-23 10:35:32
Depends: R (>= 2.10)

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'geneListPie' ...
** package 'geneListPie' successfully unpacked and MD5 sums checked
** R
** data
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'geneListPie'
    finding HTML links ... done
    geneListPie-package                     html  
    geneListProfile                         html  
    goslim.human.BP                         html  
    goslim.human.CC                         html  
    goslim.human.MF                         html  
    goslim.human.all                        html  
    goslim.mouse.BP                         html  
    goslim.mouse.CC                         html  
    goslim.mouse.MF                         html  
    goslim.mouse.all                        html  
    goslim.rat.BP                           html  
    goslim.rat.CC                           html  
    goslim.rat.MF                           html  
    goslim.rat.all                          html  
    goslim.yeast.BP                         html  
    goslim.yeast.CC                         html  
    goslim.yeast.MF                         html  
    goslim.yeast.all                        html  
    kegg2.5.generic                         html  
    load.genelist                           html  
    load.genesets                           html  
    printGeneListProfile                    html  
** building package indices
** testing if installed package can be loaded
* DONE (geneListPie)
Making 'packages.html' ... done