genoCN

Package: genoCN
Type: Package
Title: genotyping and copy number study tools
Version: 1.24.0
Date: 2010-03-12
Author: Wei Sun and ZhengZheng Tang
Maintainer: Wei Sun <wsun@bios.unc.edu>
Description: Simultaneous identification of copy number states and genotype calls for regions of either copy number variations or copy number aberrations
License: GPL (>=2)
Imports: graphics, stats, utils
LazyLoad: yes
biocViews: Microarray, Genetics
NeedsCompilation: yes
Packaged: 2016-05-04 03:28:48 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'genoCN' ...
** libs
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c tnorm_mle.c -o tnorm_mle.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c utility.c -o utility.o
utility.c: In function 'readfile':
utility.c:155:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
             fscanf(file,"%s",temp);
             ^
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c xCNV.c -o xCNV.o
gcc -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o genoCN.so tnorm_mle.o utility.o xCNV.o -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/genoCN/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'genoCN'
    finding HTML links ... done
    code.genotype                           html  
    genoCNA                                 html  
    genoCNV                                 html  
    init.Para.CNA                           html  
    init.Para.CNV                           html  
    plotCN                                  html  
    snpData                                 html  
    snpInfo                                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (genoCN)
Making 'packages.html' ... done