geomorph

Package: geomorph
Date: 2016-03-22
Type: Package
Title: Geometric Morphometric Analyses of 2D/3D Landmark Data
Version: 3.0.1
Author: Dean Adams, Michael Collyer, Emma Sherratt
Maintainer: Dean Adams <dcadams@iastate.edu>
Depends: rgl, ape, R (>= 3.1.0)
Imports: graphics, grDevices, stats, utils, jpeg, geiger, Matrix
Description: Read, manipulate, and digitize landmark data, generate shape
variables via Procrustes analysis for points, curves and surfaces, perform
shape analyses, and provide graphical depictions of shapes and patterns of
shape variation.
License: GPL (>= 2)
Packaged: 2016-03-25 15:34:16 UTC; Dean
Repository: CRAN
Date/Publication: 2016-03-25 20:00:54
RoxygenNote: 5.0.1
NeedsCompilation: no

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'geomorph' ...
** package 'geomorph' successfully unpacked and MD5 sums checked
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'geomorph'
    finding HTML links ... done
    advanced.procD.lm                       html  
    arrayspecs                              html  
    bilat.symmetry                          html  
    buildtemplate                           html  
    compare.evol.rates                      html  
    compare.modular.partitions              html  
    compare.multi.evol.rates                html  
    define.links                            html  
    define.modules                          html  
    define.sliders                          html  
    digit.curves                            html  
    digit.fixed                             html  
    digitize2d                              html  
    digitsurface                            html  
    editTemplate                            html  
    estimate.missing                        html  
Rd warning: /tmp/RtmpvG7iXA/R.INSTALL6834294424e0/geomorph/man/estimate.missing.Rd:46: missing file link 'na.omit'
    findMeanSpec                            html  
    fixed.angle                             html  
    geomorph-package                        html  
    geomorph.data.frame                     html  
    globalIntegration                       html  
    gpagen                                  html  
    gridPar                                 html  
    hummingbirds                            html  
    integration.test                        html  
    larvalTails                             html  
    modularity.test                         html  
    morphol.disparity                       html  
    morphol.integr                          html  
    mosquito                                html  
    motionpaths                             html  
    mshape                                  html  
    nested.update                           html  
    phylo.integration                       html  
    phylo.modularity                        html  
    phylo.pls                               html  
    physignal                               html  
    plethShapeFood                          html  
    plethodon                               html  
    plethspecies                            html  
    plot.CR                                 html  
    plot.CR.phylo                           html  
    plot.advanced.procD.lm                  html  
    plot.bilat.symmetry                     html  
    plot.evolrate                           html  
    plot.gpagen                             html  
    plot.physignal                          html  
    plot.pls                                html  
    plot.procD.allometry                    html  
    plot.procD.lm                           html  
    plot.trajectory.analysis                html  
    plotAllSpecimens                        html  
    plotAllometry                           html  
    plotGMPhyloMorphoSpace                  html  
    plotOutliers                            html  
    plotRefToTarget                         html  
    finding level-2 HTML links ... done

    plotTangentSpace                        html  
    plotspec                                html  
    print.CR                                html  
    print.CR.phylo                          html  
    print.advanced.procD.lm                 html  
    print.bilat.symmetry                    html  
    print.evolrate                          html  
    print.evolrate1                         html  
    print.gpagen                            html  
    print.morphol.disparity                 html  
    print.physignal                         html  
    print.pls                               html  
    print.procD.allometry                   html  
    print.procD.lm                          html  
    print.trajectory.analysis               html  
    procD.allometry                         html  
    procD.lm                                html  
    procD.pgls                              html  
    pupfish                                 html  
    ratland                                 html  
    read.morphologika                       html  
    read.ply                                html  
    readland.nts                            html  
    readland.tps                            html  
    readmulti.nts                           html  
    scallopPLY                              html  
    scallops                                html  
    summary.CR                              html  
    summary.CR.phylo                        html  
    summary.advanced.procD.lm               html  
    summary.bilat.symmetry                  html  
    summary.evolrate                        html  
    summary.evolrate1                       html  
    summary.gpagen                          html  
    summary.morphol.disparity               html  
    summary.physignal                       html  
    summary.pls                             html  
    summary.procD.allometry                 html  
    summary.procD.lm                        html  
    summary.trajectory.analysis             html  
    trajectory.analysis                     html  
    two.b.pls                               html  
    two.d.array                             html  
    warpRefMesh                             html  
    warpRefOutline                          html  
    writeland.tps                           html  
** building package indices
** testing if installed package can be loaded
* DONE (geomorph)
Making 'packages.html' ... done