Last data update: 2014.03.03
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gespeR
Package: gespeR
Imports: Matrix, glmnet, cellHTS2, Biobase, biomaRt, doParallel,
parallel, foreach, reshape2, dplyr
Depends: methods, graphics, ggplot2, R (>= 2.10)
Suggests: knitr
biocViews: CellBasedAssays, Preprocessing, GeneTarget, Regression,
Visualization
VignetteBuilder: knitr
Type: Package
Lazyload: yes
Title: Gene-Specific Phenotype EstimatoR
Version: 1.4.2
Date: 2015-07-22
Author: Fabian Schmich
Maintainer: Fabian Schmich <fabian.schmich@bsse.ethz.ch>
Description: Estimates gene-specific phenotypes from off-target confounded RNAi
screens. The phenotype of each siRNA is modeled based on on-targeted and
off-targeted genes, using a regularized linear regression model.
License: GPL-3
URL: http://www.cbg.ethz.ch/software/gespeR
Collate: 'Phenotypes-class.R' 'TargetRelations-class.R'
'gespeR-class.R' 'gespeR-concordance.R' 'gespeR-functions.R'
'gespeR-generics.R' 'gespeR-methods.R' 'gespeR-package.R'
NeedsCompilation: no
Packaged: 2016-05-16 05:08:25 UTC; biocbuild
● BiocViews: CellBasedAssays, GeneTarget, Preprocessing, Regression, Visualization
●
5 images,
29 functions,
0 datasets
●
Reverse Depends: 0
Install log
* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'gespeR' ...
** R
** data
** inst
** preparing package for lazy loading
Creating a generic function for 'as.data.frame' from package 'base' in package 'gespeR'
** help
*** installing help indices
converting help for package 'gespeR'
finding HTML links ... done
Phenotypes-class html
TargetRelations-class html
annotate.gsp-methods html
as.data.frame-Phenotypes-method html
as.data.frame.concordance html
c-Phenotypes-method html
concordance html
dim-Phenotypes-method html
gespeR-class html
finding level-2 HTML links ... done
gespeR-package html
gspssp-methods html
join-methods html
lasso.rand html
na.rem-methods html
path-methods html
plot.Phenotypes html
plot.concordance html
plot.gespeR html
rbo html
scores-methods html
simData html
stability-methods html
stability.selection html
stabilityfits html
sub-Phenotypes-ANY-ANY-ANY-method html
sub-TargetRelations-ANY-ANY-ANY-method
html
target-relations-methods html
trmatrix-methods html
values-methods html
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (gespeR)
Making 'packages.html' ... done
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