Last data update: 2014.03.03
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ggcyto
Package: ggcyto
Type: Package
Title: Visualize Cytometry data with ggplot
Version: 1.0.5
Date: 2015-11-02
Author: Mike Jiang
Maintainer: Mike Jiang <wjiang2@fhcrc.org>
Description: With the dedicated fority method implemented for flowSet,
ncdfFlowSet and GatingSet classes, both raw and gated flow cytometry data
can be plotted directly with ggplot. ggcyto wrapper and some customed
layers also make it easy to add gates and population statistics to the
plot.
VignetteBuilder: knitr
Depends: methods, ggplot2 (>= 2.0.0), flowCore, ncdfFlow (>= 2.17.1),
flowWorkspace (>= 3.17.24)
Imports: plyr, scales, data.table, RColorBrewer, gridExtra
Suggests: testthat, flowWorkspaceData, knitr, rmarkdown, flowStats,
openCyto, flowViz
License: Artistic-2.0
URL: https://github.com/RGLab/ggcyto/issues
biocViews: FlowCytometry, CellBasedAssays, Infrastructure,
Visualization
Collate: 'AllClasses.R' 'autoplot.R' 'axis_inverse_trans.R'
'compute_stats.R' 'fortify.R' 'fortify_fs.R' 'geom_gate.R'
'geom_hvline.R' 'geom_stats.R' 'getFlowFrame.R' 'ggcyto.R'
'ggcyto_GatingLayout.R' 'ggcyto_GatingSet.R' 'ggcyto_flowSet.R'
'labs.R' 'ggcyto_par.R' 'scales_flowJo_biexp.R'
'scales_flowJo_fasinh.R' 'scales_logicle.R' 'stat_position.R'
'utility.R'
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-05-19 05:53:43 UTC; biocbuild
● BiocViews: CellBasedAssays, FlowCytometry, Infrastructure, Visualization
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41 images,
33 functions,
0 datasets
●
Reverse Depends: 0
Install log
* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'ggcyto' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
converting help for package 'ggcyto'
finding HTML links ... done
as.ggplot html
autoplot html
axis_x_inverse_trans html
compute_stats html
fortify.ellipsoidGate html
fortify.filterList html
fortify.flowSet html
fortify.polygonGate html
fortify.rectangleGate html
fortify_fs html
geom_gate html
geom_hvline html
finding level-2 HTML links ... done
geom_stats html
getFlowFrame html
ggcyto.GatingSet html
ggcyto html
ggcyto.flowSet html
ggcyto_GatingSet_add html
ggcyto_flowSet_add html
ggcyto_par_default html
ggcyto_par_set html
is.ggcyto html
is.ggcyto_flowSet html
is.ggcyto_par html
labs_cyto html
marginalFilter html
Rd warning: /tmp/RtmpeWZ1XO/R.INSTALL325e220292cd/ggcyto/man/marginalFilter.Rd:14: missing file link 'boundaryFilter'
plus-.ggcyto_GatingLayout html
print.ggcyto html
print.ggcyto_GatingLayout html
scale_x_flowJo_biexp html
scale_x_flowJo_fasinh html
scale_x_logicle html
stat_position html
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (ggcyto)
Making 'packages.html' ... done
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