git2r

Package: git2r
Title: Provides Access to Git Repositories
Description: Interface to the 'libgit2' library, which is a pure C
implementation of the 'Git' core methods. Provides access to 'Git'
repositories to extract data and running some basic 'Git'
commands.
Version: 0.15.0
License: GPL-2
Copyright: See COPYRIGHTS file.
URL: https://github.com/ropensci/git2r
BugReports: https://github.com/ropensci/git2r/issues
Maintainer: Stefan Widgren <stefan.widgren@gmail.com>
Author: See AUTHORS file.
Imports: graphics, utils
Depends: R (>= 3.0.2), methods
Type: Package
LazyData: true
Biarch: true
NeedsCompilation: yes
SystemRequirements: zlib headers and library. OpenSSL headers and
library. LibSSH2 (optional on non-Windows) to enable the SSH
transport.
Collate: 'S4_classes.r' 'blame.r' 'blob.r' 'branch.r'
'bundle_r_package.r' 'checkout.r' 'commit.r' 'config.r'
'contributions.r' 'credential.r' 'diff.r' 'fetch.r' 'git2r.r'
'index.r' 'libgit2.r' 'merge.r' 'note.r' 'odb.r' 'plot.r'
'pull.r' 'punch_card.r' 'refspec.r' 'push.r' 'reference.r'
'reflog.r' 'remote.r' 'repository.r' 'reset.r' 'revparse.r'
'signature.r' 'stash.r' 'status.r' 'tag.r' 'time.r' 'tree.r'
'when.r'
RoxygenNote: 5.0.1
Packaged: 2016-05-11 05:40:05 UTC; stefan
Repository: CRAN
Date/Publication: 2016-05-11 12:06:36

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'git2r' ...
** package 'git2r' successfully unpacked and MD5 sums checked
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for library containing inflate... -lz
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for libssl... yes
checking for library containing EVP_EncryptInit... -lcrypto
checking for library containing SSL_library_init... none required
checking for library containing libssh2_version... no
configure: WARNING:
  ---------------------------------------------
   Unable to find the LibSSH2 library on this
   system. Building a version without support
   for SSH transport.

   To build with SSH support, please install:
     libssh2-1-dev (package on e.g. Debian and Ubuntu)
     libssh2-devel (package on e.g. Fedora, CentOS and RHEL)
     libssh2       (Homebrew package on OS X)
   and try again.

   If the LibSSH2 library is installed on
   your system but the git2r configuration
   is unable to find it, you can specify
   the include and lib path to LibSSH2 with:
   R CMD INSTALL --configure-args='--with-libssh2-include=INCLUDE_PATH --with-libssh2-lib=LIB_PATH' git2r
  ---------------------------------------------
checking for gawk... gawk
checking for curl-config... /usr/bin/curl-config
checking for the version of libcurl... 7.47.0
checking whether libcurl is usable... yes
checking for curl_free... yes
checking for ANSI C header files... no
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking size of void*... 8
checking for struct stat.st_atimespec... no
checking for futimens... yes
checking for qsort_r... yes
checking for qsort_s... no
checking if '-Wno-unused-function' is supported... yes

  ----- Results of the git2r package configure -----

    OpenSSL to talk over HTTPS...........: yes
    LibSSH2 to enable the SSH transport..: no

  --------------------------------------------------

configure: creating ./config.status
config.status: creating src/Makevars
** libs
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c git2r.c -o git2r.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c git2r_arg.c -o git2r_arg.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c git2r_blame.c -o git2r_blame.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c git2r_blob.c -o git2r_blob.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c git2r_branch.c -o git2r_branch.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c git2r_checkout.c -o git2r_checkout.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c git2r_clone.c -o git2r_clone.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c git2r_commit.c -o git2r_commit.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c git2r_config.c -o git2r_config.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c git2r_cred.c -o git2r_cred.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c git2r_diff.c -o git2r_diff.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c git2r_error.c -o git2r_error.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c git2r_graph.c -o git2r_graph.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c git2r_index.c -o git2r_index.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c git2r_libgit2.c -o git2r_libgit2.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c git2r_merge.c -o git2r_merge.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c git2r_note.c -o git2r_note.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c git2r_object.c -o git2r_object.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c git2r_odb.c -o git2r_odb.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c git2r_oid.c -o git2r_oid.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c git2r_push.c -o git2r_push.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c git2r_reference.c -o git2r_reference.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c git2r_reflog.c -o git2r_reflog.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c git2r_remote.c -o git2r_remote.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c git2r_repository.c -o git2r_repository.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c git2r_reset.c -o git2r_reset.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c git2r_revparse.c -o git2r_revparse.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c git2r_revwalk.c -o git2r_revwalk.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c git2r_signature.c -o git2r_signature.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c git2r_stash.c -o git2r_stash.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c git2r_status.c -o git2r_status.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c git2r_tag.c -o git2r_tag.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c git2r_transfer.c -o git2r_transfer.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c git2r_tree.c -o git2r_tree.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/annotated_commit.c -o libgit2/src/annotated_commit.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/attr.c -o libgit2/src/attr.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/attrcache.c -o libgit2/src/attrcache.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/attr_file.c -o libgit2/src/attr_file.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/blame.c -o libgit2/src/blame.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/blame_git.c -o libgit2/src/blame_git.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/blob.c -o libgit2/src/blob.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/branch.c -o libgit2/src/branch.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/buffer.c -o libgit2/src/buffer.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/buf_text.c -o libgit2/src/buf_text.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/cache.c -o libgit2/src/cache.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/checkout.c -o libgit2/src/checkout.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/cherrypick.c -o libgit2/src/cherrypick.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/clone.c -o libgit2/src/clone.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/commit.c -o libgit2/src/commit.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/commit_list.c -o libgit2/src/commit_list.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/config.c -o libgit2/src/config.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/config_cache.c -o libgit2/src/config_cache.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/config_file.c -o libgit2/src/config_file.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/crlf.c -o libgit2/src/crlf.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/curl_stream.c -o libgit2/src/curl_stream.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/date.c -o libgit2/src/date.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/delta-apply.c -o libgit2/src/delta-apply.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/delta.c -o libgit2/src/delta.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/describe.c -o libgit2/src/describe.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/diff.c -o libgit2/src/diff.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/diff_driver.c -o libgit2/src/diff_driver.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/diff_file.c -o libgit2/src/diff_file.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/diff_patch.c -o libgit2/src/diff_patch.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/diff_print.c -o libgit2/src/diff_print.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/diff_stats.c -o libgit2/src/diff_stats.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/diff_tform.c -o libgit2/src/diff_tform.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/diff_xdiff.c -o libgit2/src/diff_xdiff.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/errors.c -o libgit2/src/errors.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/fetch.c -o libgit2/src/fetch.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/fetchhead.c -o libgit2/src/fetchhead.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/filebuf.c -o libgit2/src/filebuf.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/fileops.c -o libgit2/src/fileops.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/filter.c -o libgit2/src/filter.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/fnmatch.c -o libgit2/src/fnmatch.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/global.c -o libgit2/src/global.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/graph.c -o libgit2/src/graph.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/hash.c -o libgit2/src/hash.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/hashsig.c -o libgit2/src/hashsig.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/ident.c -o libgit2/src/ident.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/ignore.c -o libgit2/src/ignore.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/index.c -o libgit2/src/index.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/indexer.c -o libgit2/src/indexer.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/iterator.c -o libgit2/src/iterator.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/merge.c -o libgit2/src/merge.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/merge_file.c -o libgit2/src/merge_file.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/message.c -o libgit2/src/message.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/mwindow.c -o libgit2/src/mwindow.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/netops.c -o libgit2/src/netops.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/notes.c -o libgit2/src/notes.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/object_api.c -o libgit2/src/object_api.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/object.c -o libgit2/src/object.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/odb.c -o libgit2/src/odb.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/odb_loose.c -o libgit2/src/odb_loose.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/odb_mempack.c -o libgit2/src/odb_mempack.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/odb_pack.c -o libgit2/src/odb_pack.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/oidarray.c -o libgit2/src/oidarray.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/oid.c -o libgit2/src/oid.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/openssl_stream.c -o libgit2/src/openssl_stream.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/pack.c -o libgit2/src/pack.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/pack-objects.c -o libgit2/src/pack-objects.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/path.c -o libgit2/src/path.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/pathspec.c -o libgit2/src/pathspec.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/pool.c -o libgit2/src/pool.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/posix.c -o libgit2/src/posix.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/pqueue.c -o libgit2/src/pqueue.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/push.c -o libgit2/src/push.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/rebase.c -o libgit2/src/rebase.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/refdb.c -o libgit2/src/refdb.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/refdb_fs.c -o libgit2/src/refdb_fs.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/reflog.c -o libgit2/src/reflog.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/refs.c -o libgit2/src/refs.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/refspec.c -o libgit2/src/refspec.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/remote.c -o libgit2/src/remote.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/repository.c -o libgit2/src/repository.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/reset.c -o libgit2/src/reset.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/revert.c -o libgit2/src/revert.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/revparse.c -o libgit2/src/revparse.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/revwalk.c -o libgit2/src/revwalk.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/settings.c -o libgit2/src/settings.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/sha1_lookup.c -o libgit2/src/sha1_lookup.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/signature.c -o libgit2/src/signature.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/socket_stream.c -o libgit2/src/socket_stream.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/sortedcache.c -o libgit2/src/sortedcache.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/stash.c -o libgit2/src/stash.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/status.c -o libgit2/src/status.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/strmap.c -o libgit2/src/strmap.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/submodule.c -o libgit2/src/submodule.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/sysdir.c -o libgit2/src/sysdir.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/tag.c -o libgit2/src/tag.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/thread-utils.c -o libgit2/src/thread-utils.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/tls_stream.c -o libgit2/src/tls_stream.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/trace.c -o libgit2/src/trace.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/transaction.c -o libgit2/src/transaction.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/transport.c -o libgit2/src/transport.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/tree.c -o libgit2/src/tree.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/tree-cache.c -o libgit2/src/tree-cache.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/tsort.c -o libgit2/src/tsort.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/util.c -o libgit2/src/util.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/vector.c -o libgit2/src/vector.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/zstream.c -o libgit2/src/zstream.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/transports/auth.c -o libgit2/src/transports/auth.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/transports/cred.c -o libgit2/src/transports/cred.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/transports/cred_helpers.c -o libgit2/src/transports/cred_helpers.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/transports/git.c -o libgit2/src/transports/git.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/transports/http.c -o libgit2/src/transports/http.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/transports/local.c -o libgit2/src/transports/local.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/transports/smart.c -o libgit2/src/transports/smart.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/transports/smart_pkt.c -o libgit2/src/transports/smart_pkt.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/transports/smart_protocol.c -o libgit2/src/transports/smart_protocol.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/transports/ssh.c -o libgit2/src/transports/ssh.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/unix/map.c -o libgit2/src/unix/map.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/unix/realpath.c -o libgit2/src/unix/realpath.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/xdiff/xdiffi.c -o libgit2/src/xdiff/xdiffi.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/xdiff/xemit.c -o libgit2/src/xdiff/xemit.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/xdiff/xhistogram.c -o libgit2/src/xdiff/xhistogram.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/xdiff/xmerge.c -o libgit2/src/xdiff/xmerge.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/xdiff/xpatience.c -o libgit2/src/xdiff/xpatience.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/xdiff/xprepare.c -o libgit2/src/xdiff/xprepare.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/src/xdiff/xutils.c -o libgit2/src/xdiff/xutils.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DOPENSSL_SHA1 -DGIT_CURL -DGIT_ARCH_64 -DHAVE_FUTIMENS -DHAVE_QSORT_R  -I/usr/local/include   -Wno-unused-function  -fpic  -g -O2  -c libgit2/deps/http-parser/http_parser.c -o libgit2/deps/http-parser/http_parser.o
ar rcs libmygit.a libgit2/src/annotated_commit.o libgit2/src/attr.o libgit2/src/attrcache.o libgit2/src/attr_file.o libgit2/src/blame.o libgit2/src/blame_git.o libgit2/src/blob.o libgit2/src/branch.o libgit2/src/buffer.o libgit2/src/buf_text.o libgit2/src/cache.o libgit2/src/checkout.o libgit2/src/cherrypick.o libgit2/src/clone.o libgit2/src/commit.o libgit2/src/commit_list.o libgit2/src/config.o libgit2/src/config_cache.o libgit2/src/config_file.o libgit2/src/crlf.o libgit2/src/curl_stream.o libgit2/src/date.o libgit2/src/delta-apply.o libgit2/src/delta.o libgit2/src/describe.o libgit2/src/diff.o libgit2/src/diff_driver.o libgit2/src/diff_file.o libgit2/src/diff_patch.o libgit2/src/diff_print.o libgit2/src/diff_stats.o libgit2/src/diff_tform.o libgit2/src/diff_xdiff.o libgit2/src/errors.o libgit2/src/fetch.o libgit2/src/fetchhead.o libgit2/src/filebuf.o libgit2/src/fileops.o libgit2/src/filter.o libgit2/src/fnmatch.o libgit2/src/global.o libgit2/src/graph.o libgit2/src/hash.o libgit2/src/hashsig.o libgit2/src/ident.o libgit2/src/ignore.o libgit2/src/index.o libgit2/src/indexer.o libgit2/src/iterator.o libgit2/src/merge.o libgit2/src/merge_file.o libgit2/src/message.o libgit2/src/mwindow.o libgit2/src/netops.o libgit2/src/notes.o libgit2/src/object_api.o libgit2/src/object.o libgit2/src/odb.o libgit2/src/odb_loose.o libgit2/src/odb_mempack.o libgit2/src/odb_pack.o libgit2/src/oidarray.o libgit2/src/oid.o libgit2/src/openssl_stream.o libgit2/src/pack.o libgit2/src/pack-objects.o libgit2/src/path.o libgit2/src/pathspec.o libgit2/src/pool.o libgit2/src/posix.o libgit2/src/pqueue.o libgit2/src/push.o libgit2/src/rebase.o libgit2/src/refdb.o libgit2/src/refdb_fs.o libgit2/src/reflog.o libgit2/src/refs.o libgit2/src/refspec.o libgit2/src/remote.o libgit2/src/repository.o libgit2/src/reset.o libgit2/src/revert.o libgit2/src/revparse.o libgit2/src/revwalk.o libgit2/src/settings.o libgit2/src/sha1_lookup.o libgit2/src/signature.o libgit2/src/socket_stream.o libgit2/src/sortedcache.o libgit2/src/stash.o libgit2/src/status.o libgit2/src/strmap.o libgit2/src/submodule.o libgit2/src/sysdir.o libgit2/src/tag.o libgit2/src/thread-utils.o libgit2/src/tls_stream.o libgit2/src/trace.o libgit2/src/transaction.o libgit2/src/transport.o libgit2/src/tree.o libgit2/src/tree-cache.o libgit2/src/tsort.o libgit2/src/util.o libgit2/src/vector.o libgit2/src/zstream.o libgit2/src/transports/auth.o libgit2/src/transports/cred.o libgit2/src/transports/cred_helpers.o libgit2/src/transports/git.o libgit2/src/transports/http.o libgit2/src/transports/local.o libgit2/src/transports/smart.o libgit2/src/transports/smart_pkt.o libgit2/src/transports/smart_protocol.o libgit2/src/transports/ssh.o libgit2/src/unix/map.o libgit2/src/unix/realpath.o libgit2/src/xdiff/xdiffi.o libgit2/src/xdiff/xemit.o libgit2/src/xdiff/xhistogram.o libgit2/src/xdiff/xmerge.o libgit2/src/xdiff/xpatience.o libgit2/src/xdiff/xprepare.o libgit2/src/xdiff/xutils.o libgit2/deps/http-parser/http_parser.o 
gcc -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o git2r.so git2r.o git2r_arg.o git2r_blame.o git2r_blob.o git2r_branch.o git2r_checkout.o git2r_clone.o git2r_commit.o git2r_config.o git2r_cred.o git2r_diff.o git2r_error.o git2r_graph.o git2r_index.o git2r_libgit2.o git2r_merge.o git2r_note.o git2r_object.o git2r_odb.o git2r_oid.o git2r_push.o git2r_reference.o git2r_reflog.o git2r_remote.o git2r_repository.o git2r_reset.o git2r_revparse.o git2r_revwalk.o git2r_signature.o git2r_stash.o git2r_status.o git2r_tag.o git2r_transfer.o git2r_tree.o -L. -lmygit -lcrypto -lssl -lz -L/usr/lib/x86_64-linux-gnu -lcurl -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/git2r/libs
** R
** inst
** preparing package for lazy loading
Creating a generic function for 'summary' from package 'base' in package 'git2r'
Creating a generic function for 'diff' from package 'base' in package 'git2r'
Creating a generic function for 'merge' from package 'base' in package 'git2r'
Creating a generic function for 'plot' from package 'graphics' in package 'git2r'
Creating a generic function for 'head' from package 'utils' in package 'git2r'
** help
*** installing help indices
  converting help for package 'git2r'
    finding HTML links ... done
    add-methods                             html  
    a