globaltest

Package: globaltest
Version: 5.26.0
Date: 2015-09-29
Title: Testing Groups of Covariates/Features for Association with a
Response Variable, with Applications to Gene Set Testing
Author: Jelle Goeman and Jan Oosting, with contributions by Livio Finos and Aldo Solari
Maintainer: Jelle Goeman <jelle.goeman@radboudumc.nl>
Depends: methods, survival
Imports: Biobase, AnnotationDbi, annotate, graphics
Suggests: vsn, golubEsets, KEGG.db, hu6800.db, Rgraphviz, GO.db,
lungExpression, org.Hs.eg.db, GSEABase, penalized, gss, MASS,
boot, rpart
Description: The global test tests groups of covariates (or features) for association with a response variable. This package implements the test with diagnostic plots and multiple testing utilities, along with several functions to facilitate the use of this test for gene set testing of GO and KEGG terms.
License: GPL (>= 2)
biocViews: Microarray, OneChannel, Bioinformatics,
DifferentialExpression, GO, Pathways
Collate: gt-object.R mlogit.R comparative.R diagnosticplots.R
focuslevel.R generalizedFdistribution.R genesettesting.R gt.R
inheritance.R models.R options.R utilities.R goodnessoffit.R
LazyLoad: yes
NeedsCompilation: no
Packaged: 2016-05-04 02:45:14 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'globaltest' ...
** R
** inst
** preparing package for lazy loading
Creating a generic function for 'sort' from package 'base' in package 'globaltest'
Creating a generic function for 'model.matrix' from package 'stats' in package 'globaltest'
Creating a generic function for 'coefficients' from package 'stats' in package 'globaltest'
Creating a generic function for 'fitted.values' from package 'stats' in package 'globaltest'
Creating a generic function for 'residuals' from package 'stats' in package 'globaltest'
** help
*** installing help indices
  converting help for package 'globaltest'
    finding HTML links ... done
    comparative                             html  
    diagnostics                             html  
    genesettesting                          html  
    goodnessoffit                           html  
    gt                                      html  
    gt.object-class                         html  
    gtoptions                               html  
    mlogit                                  html  
    multtest                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (globaltest)
Making 'packages.html' ... done