gputools

Package: gputools
Version: 1.0
Title: A Few GPU Enabled Functions
Authors@R: c(person("Josh", "Buckner", email = "nullsatz@gmail.com",
role = c("aut", "cre")),
person("Mark", "Seligman", email = "mseligman@suiji.org", role = "aut"),
person("Justin", "Wilson", role = "ctb"))
Depends: R (>= 3.0.0)
SystemRequirements: Nvidia's CUDA toolkit (>= release 5.0)
Description: Provides R interfaces to a handful of common
functions implemented using the Nvidia CUDA toolkit. Some of the
functions require at least GPU Compute Capability 1.3.
Thanks to Craig Stark at UC Irvine for donating time on his lab's Mac.
License: GPL-3
URL: https://github.com/nullsatz/gputools/wiki
BugReports: https://github.com/nullsatz/gputools/issues
Repository: CRAN
NeedsCompilation: yes
Packaged: 2015-11-10 20:56:11 UTC; bucknerj
Author: Josh Buckner [aut, cre],
Mark Seligman [aut],
Justin Wilson [ctb]
Maintainer: Josh Buckner <nullsatz@gmail.com>
Date/Publication: 2015-11-11 10:44:30

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'gputools' ...
** package 'gputools' successfully unpacked and MD5 sums checked
checking "CUDA compiler"... "environment variable NVCC not set"
checking for nvcc... /usr/local/cuda/bin/nvcc
"using NVCC=/usr/local/cuda/bin/nvcc"
checking "root of the CUDA install directory"... "environment variable CUDA_HOME not set"
"using CUDA_HOME=/usr/local/cuda"
checking "location of CUDA libraries"... checking for "/usr/local/cuda/lib/libcublas.so"... no
checking for "/usr/local/cuda/lib64/libcublas.so"... no
checking for "/usr/local/cuda/lib/libcublas.dylib"... no
checking for "/usr/local/cuda/lib64/libcublas.dylib"... no
checking "R"... "using /home/ddbj/local/lib64/R for the root of the R install directory"
"using /home/ddbj/local/lib64/R/include for R header files"
checking for rpath flag style... checking for cc... cc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether cc accepts -g... yes
checking for cc option to accept ISO C89... none needed
rpath flag style... gnu
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
configure: creating ./config.status
config.status: creating src/Makefile
** libs
** arch - 
/usr/local/cuda/bin/nvcc -c -Xcompiler "-fpic -I/usr/local/include -g -O2" -I. -I"/usr/local/cuda/include" -I"/home/ddbj/local/lib64/R/include" rinterface.cu -o rinterface.o
/bin/bash: /usr/local/cuda/bin/nvcc: No such file or directory
Makefile:32: recipe for target 'rinterface.o' failed
make: *** [rinterface.o] Error 127
ERROR: compilation failed for package 'gputools'
* removing '/home/ddbj/local/lib64/R/library/gputools'