graph

Package: graph
Title: graph: A package to handle graph data structures
Version: 1.50.0
Author: R. Gentleman, Elizabeth Whalen, W. Huber, S. Falcon
Description: A package that implements some simple graph handling
capabilities.
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
License: Artistic-2.0
Depends: R (>= 2.10), methods, BiocGenerics (>= 0.13.11)
Imports: stats, stats4, utils
Suggests: SparseM (>= 0.36), XML, RBGL, RUnit, cluster
Enhances: Rgraphviz
Collate: AllClasses.R AllGenerics.R bitarray.R buildDepGraph.R
methods-graph.R graphNEL.R clustergraph.R NELhandler.R
edgefunctions.R graphfunctions.R GXLformals.R gxlReader.R
random.R write.tlp.R mat2graph.R settings.R zzz.R
standardLabeling.R TODOT.R toDotWithRI.R methods-graphAM.R
attrData.R reverseEdgeDirections.R nodes-methods.R
methods-multiGraph.R test_graph_package.R MultiGraph.R
methods-graphBAM.R graph-constructors.R
LazyLoad: yes
Packaged: 2016-05-04 02:37:54 UTC; biocbuild
biocViews: GraphAndNetwork
NeedsCompilation: yes

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'graph' ...
** libs
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c graph.c -o graph.o
gcc -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o graph.so graph.o -L/home/ddbj/local/lib64/R/lib -lR
mv graph.so BioC_graph.so
installing to /home/ddbj/local/lib64/R/library/graph/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'graph'
    finding HTML links ... done
    DFS                                     html  
    IMCA                                    html  
    MAPKsig                                 html  
    MultiGraph-class                        html  
    acc-methods                             html  
    addEdge                                 html  
    addNode                                 html  
    adj-methods                             html  
    adjacencyMatrix                         html  
    apoptosisGraph                          html  
    attrData-class                          html  
    attrDataItem-methods                    html  
    attrDefaults-methods                    html  
    aveNumEdges                             html  
    biocRepos                               html  
    boundary                                html  
    calcProb                                html  
    calcSumProb                             html  
    clearNode                               html  
    clusterGraph-class                      html  
    clusteringCoefficient-methods           html  
    combineNodes                            html  
    defunct                                 html  
    distGraph-class                         html  
    duplicatedEdges                         html  
    edgeData-methods                        html  
    edgeDataDefaults-methods                html  
    edgeMatrix                              html  
    edgeSets                                html  
    edgeWeights                             html  
    fromGXL-methods                         html  
    graph-class                             html  
    graph2SparseM                           html  
    graphAM-class                           html  
    graphBAM-class                          html  
    graphExamples                           html  
    graphNEL-class                          html  
    inEdges                                 html  
    internal                                html  
    isAdjacent-methods                      html  
    isDirected-methods                      html  
    leaves                                  html  
    listEdges                               html  
    matrix2Graph                            html  
    mostEdges                               html  
    multigraph                              html  
    nodeData-methods                        html  
    nodeDataDefaults-methods                html  
    numNoEdges                              html  
    pancrCaIni                              html  
    randomEGraph                            html  
    randomGraph                             html  
    randomNodeGraph                         html  
    removeEdge                              html  
    removeNode                              html  
    renderInfo-class                        html  
    reverseEdgeDirections                   html  
    settings                                html  
    simpleEdge-class                        html  
    standardLabeling                        html  
    subGraph                                html  
    toDotR-methods                          html  
    toDotWithRI                             html  
    ugraph                                  html  
    validGraph                              html  
    write.tlp                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (graph)
Making 'packages.html' ... done