gtools

Package: gtools
Title: Various R Programming Tools
Description: Functions to assist in R programming, including:
- assist in developing, updating, and maintaining R and R packages ('ask', 'checkRVersion',
'getDependencies', 'keywords', 'scat'),
- calculate the logit and inverse logit transformations ('logit', 'inv.logit'),
- test if a value is missing, empty or contains only NA and NULL values ('invalid'),
- manipulate R's .Last function ('addLast'),
- define macros ('defmacro'),
- detect odd and even integers ('odd', 'even'),
- convert strings containing non-ASCII characters (like single quotes) to plain ASCII ('ASCIIfy'),
- perform a binary search ('binsearch'),
- sort strings containing both numeric and character components ('mixedsort'),
- create a factor variable from the quantiles of a continuous variable ('quantcut'),
- enumerate permutations and combinations ('combinations', 'permutation'),
- calculate and convert between fold-change and log-ratio ('foldchange',
'logratio2foldchange', 'foldchange2logratio'),
- calculate probabilities and generate random numbers from Dirichlet distributions
('rdirichlet', 'ddirichlet'),
- apply a function over adjacent subsets of a vector ('running'),
- modify the TCP_NODELAY ('de-Nagle') flag for socket objects,
- efficient 'rbind' of data frames, even if the column names don't match ('smartbind'),
- generate significance stars from p-values ('stars.pval'),
- convert characters to/from ASCII codes.
Version: 3.5.0
Date: 2015-05-26
Author: Gregory R. Warnes, Ben Bolker, and Thomas Lumley
Maintainer: Gregory R. Warnes <greg@warnes.net>
License: GPL-2
Repository: CRAN
Repository/R-Forge/Project: r-gregmisc
Repository/R-Forge/Revision: 2048
Repository/R-Forge/DateTimeStamp: 2015-05-27 16:38:37
Date/Publication: 2015-05-29 10:36:40
NeedsCompilation: yes
Packaged: 2015-05-27 16:45:10 UTC; rforge
Depends: R (>= 2.10)

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'gtools' ...
** package 'gtools' successfully unpacked and MD5 sums checked
** libs
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c roman2int.c -o roman2int.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c setTCPNoDelay.c -o setTCPNoDelay.o
gcc -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o gtools.so roman2int.o setTCPNoDelay.o -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/gtools/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'gtools'
    finding HTML links ... done
    ASCIIfy                                 html  
    ELISA                                   html  
    asc                                     html  
Rd warning: /tmp/RtmpYp5DBZ/R.INSTALL4d944b8d676d/gtools/man/asc.Rd:17: missing file link 'sapply'
Rd warning: /tmp/RtmpYp5DBZ/R.INSTALL4d944b8d676d/gtools/man/asc.Rd:39: missing file link 'charToRaw'
Rd warning: /tmp/RtmpYp5DBZ/R.INSTALL4d944b8d676d/gtools/man/asc.Rd:40: missing file link 'rawToChar'
Rd warning: /tmp/RtmpYp5DBZ/R.INSTALL4d944b8d676d/gtools/man/asc.Rd:41: missing file link 'as.raw'
    ask                                     html  
    binsearch                               html  
    checkRVersion                           html  
Rd warning: /tmp/RtmpYp5DBZ/R.INSTALL4d944b8d676d/gtools/man/checkRVersion.Rd:35: missing file link 'R.Version'
    combinations                            html  
Rd warning: /tmp/RtmpYp5DBZ/R.INSTALL4d944b8d676d/gtools/man/combinations.Rd:45: missing file link 'choose'
    defmacro                                html  
    dirichlet                               html  
    foldchange                              html  
    getDependencies                         html  
    gtools-defunct                          html  
    gtools-deprecated                       html  
    invalid                                 html  
Rd warning: /tmp/RtmpYp5DBZ/R.INSTALL4d944b8d676d/gtools/man/invalid.Rd:21: missing file link 'is.na'
Rd warning: /tmp/RtmpYp5DBZ/R.INSTALL4d944b8d676d/gtools/man/invalid.Rd:22: missing file link 'is.null'
    keywords                                html  
    lastAdd                                 html  
Rd warning: /tmp/RtmpYp5DBZ/R.INSTALL4d944b8d676d/gtools/man/lastAdd.Rd:34: missing file link '.Last'
    loadedPackages                          html  
Rd warning: /tmp/RtmpYp5DBZ/R.INSTALL4d944b8d676d/gtools/man/loadedPackages.Rd:29: missing file link 'loadedNamespaces'
Rd warning: /tmp/RtmpYp5DBZ/R.INSTALL4d944b8d676d/gtools/man/loadedPackages.Rd:30: missing file link 'packageVersion'
    logit                                   html  
    mixedsort                               html  
    na.replace                              html  
Rd warning: /tmp/RtmpYp5DBZ/R.INSTALL4d944b8d676d/gtools/man/na.replace.Rd:28: missing file link 'is.na'
Rd warning: /tmp/RtmpYp5DBZ/R.INSTALL4d944b8d676d/gtools/man/na.replace.Rd:28: missing file link 'na.omit'
    oddeven                                 html  
Rd warning: /tmp/RtmpYp5DBZ/R.INSTALL4d944b8d676d/gtools/man/oddeven.Rd:21: missing file link 'round'
    permute                                 html  
    quantcut                                html  
    roman2int                               html  
Rd warning: /tmp/RtmpYp5DBZ/R.INSTALL4d944b8d676d/gtools/man/roman2int.Rd:25: missing file link 'as.roman'
    running                                 html  
Rd warning: /tmp/RtmpYp5DBZ/R.INSTALL4d944b8d676d/gtools/man/running.Rd:61: missing file link 'sapply'
    scat                                    html  
    setTCPNoDelay                           html  
    smartbind                               html  
    stars.pval                              html  
    unByteCode                              html  
Rd warning: /tmp/RtmpYp5DBZ/R.INSTALL4d944b8d676d/gtools/man/unByteCode.Rd:53: missing file link 'disassemble'
** building package indices
** testing if installed package can be loaded
* DONE (gtools)
Making 'packages.html' ... done