Last data update: 2014.03.03
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gtrellis
Package: gtrellis
Type: Package
Title: Genome Level Trellis Layout
Version: 1.4.2
Date: 2016-4-26
Author: Zuguang Gu
Maintainer: Zuguang Gu <z.gu@dkfz.de>
Depends: R (>= 3.1.2), grid, IRanges, GenomicRanges
Imports: circlize (>= 0.3.3), GetoptLong
Suggests: testthat (>= 1.0.0), knitr, RColorBrewer, markdown,
ComplexHeatmap (>= 1.9.7)
VignetteBuilder: knitr
Description: Genome level Trellis graph visualizes genomic data conditioned by
genomic categories (e.g. chromosomes). For each genomic category, multiple
dimensional data which are represented as tracks describe different features
from different aspects. This package provides high flexibility to arrange
genomic categories and to add self-defined graphics in the plot.
biocViews: Software, Visualization, Sequencing
URL: https://github.com/jokergoo/gtrellis
License: GPL (>= 2)
Packaged: 2016-05-16 05:21:51 UTC; biocbuild
Repository: Bioconductor
Date/Publication: 2016-4-26 00:00:00
NeedsCompilation: no
● BiocViews: Sequencing, Software, Visualization
●
13 images,
11 functions,
0 datasets
●
Reverse Depends: 0
Install log
* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'gtrellis' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
converting help for package 'gtrellis'
finding HTML links ... done
add_heatmap_track html
Rd warning: /tmp/RtmpFGdIf0/R.INSTALL33f6330a9a56/gtrellis/man/add_heatmap_track.rd:14: missing file link 'GRanges'
add_ideogram_track html
add_lines_track html
Rd warning: /tmp/RtmpFGdIf0/R.INSTALL33f6330a9a56/gtrellis/man/add_lines_track.rd:14: missing file link 'GRanges'
add_points_track html
Rd warning: /tmp/RtmpFGdIf0/R.INSTALL33f6330a9a56/gtrellis/man/add_points_track.rd:14: missing file link 'GRanges'
add_rect_track html
Rd warning: /tmp/RtmpFGdIf0/R.INSTALL33f6330a9a56/gtrellis/man/add_rect_track.rd:14: missing file link 'GRanges'
add_segments_track html
Rd warning: /tmp/RtmpFGdIf0/R.INSTALL33f6330a9a56/gtrellis/man/add_segments_track.rd:14: missing file link 'GRanges'
add_track html
current_track html
get_cell_meta_data html
gtrellis_layout html
Rd warning: /tmp/RtmpFGdIf0/R.INSTALL33f6330a9a56/gtrellis/man/gtrellis_layout.rd:44: missing file link 'I'
Rd warning: /tmp/RtmpFGdIf0/R.INSTALL33f6330a9a56/gtrellis/man/gtrellis_layout.rd:57: missing file link 'grob'
gtrellis_show_index html
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (gtrellis)
Making 'packages.html' ... done
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