gwascat

Package: gwascat
Title: representing and modeling data in the EMBL-EBI GWAS catalog
Version: 2.4.2
Author: VJ Carey <stvjc@channing.harvard.edu>
Description: Represent and model data in the EMBL-EBI GWAS catalog.
Enhances: SNPlocs.Hsapiens.dbSNP144.GRCh37
Depends: R (>= 3.0.0), Homo.sapiens
Imports: methods, BiocGenerics, S4Vectors (>= 0.9.25), IRanges,
GenomeInfoDb, GenomicRanges, snpStats, Biostrings, Rsamtools,
rtracklayer, gQTLstats, Gviz, VariantAnnotation, AnnotationHub,
AnnotationDbi, GenomicFeatures, graph, ggbio, ggplot2,
SummarizedExperiment
Suggests: DO.db, DT, utils, knitr, RBGL, RUnit, GGtools
VignetteBuilder: utils, knitr
Maintainer: VJ Carey <stvjc@channing.harvard.edu>
License: Artistic-2.0
LazyData: no
biocViews: Genetics
NeedsCompilation: no
Packaged: 2016-05-16 03:16:36 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'gwascat' ...
** R
** data
** inst
** preparing package for lazy loading
Warning: replacing previous import 'ggplot2::Position' by 'BiocGenerics::Position' when loading 'ggbio'
** help
*** installing help indices
  converting help for package 'gwascat'
    finding HTML links ... done
    bindcadd_snv                            html  
    gwascat-package                         html  
Rd warning: /tmp/RtmpDAX5HK/R.INSTALL34096a07e4ce/gwascat/man/gwascat-package.Rd:76: missing file link 'nodeData'
    gwastagger                              html  
    gwaswloc-class                          html  
    finding level-2 HTML links ... done

    gwcex2gviz                              html  
    gwdf_2012_02_02                         html  
    ldtagr                                  html  
Rd warning: /tmp/RtmpDAX5HK/R.INSTALL34096a07e4ce/gwascat/man/ldtagr.Rd:19: missing file link 'genotypeToSnpMatrix'
    locon6                                  html  
    makeCurrentGwascat                      html  
    obo2graphNEL                            html  
    riskyAlleleCount                        html  
    topTraits                               html  
    traitsManh                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
Warning: replacing previous import 'ggplot2::Position' by 'BiocGenerics::Position' when loading 'ggbio'
* DONE (gwascat)
Making 'packages.html' ... done