hisse

Package: hisse
Version: 1.7
Date: 2016-6-8
Title: Hidden State Speciation and Extinction
Author: Jeremy M. Beaulieu <jbeaulieu@nimbios.org>, Brian O'Meara <bomeara@utk.edu>
Maintainer: Jeremy Beaulieu <jbeaulieu@nimbios.org>
Depends: ape, deSolve, GenSA, subplex, nloptr
Suggests: testthat, diversitree, knitr
Imports: parallel, phytools, data.table, methods
Description: Sets up and executes a HiSSE model (Hidden State Speciation and Extinction) on a phylogeny and character sets to test for hidden shifts in trait dependent rates of diversification.
License: GPL (>= 2)
VignetteBuilder: knitr
NeedsCompilation: yes
Packaged: 2016-06-13 17:27:00 UTC; jbeaulieu
Repository: CRAN
Date/Publication: 2016-06-14 08:29:49

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'hisse' ...
** package 'hisse' successfully unpacked and MD5 sums checked
** libs
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c bisse-ext-derivs.c -o bisse-ext-derivs.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c hisse-ext-derivs.c -o hisse-ext-derivs.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c hissenull-ext-derivs.c -o hissenull-ext-derivs.o
gcc -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o hisse.so bisse-ext-derivs.o hisse-ext-derivs.o hissenull-ext-derivs.o -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/hisse/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'hisse'
    finding HTML links ... done
    bisse2hisse                             html  
    hisse                                   html  
    hisseNull4                              html  
    marginRecon                             html  
    plotHisse                               html  
    simToPhylo                              html  
    simulateHisse                           html  
    supportRegion                           html  
    transMat                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (hisse)
Making 'packages.html' ... done