iC10

Package: iC10
Type: Package
Title: A Copy Number and Expression-Based Classifier for Breast Tumours
Version: 1.1.3
Date: 2015-09-22
Author: Oscar M Rueda
Maintainer: Oscar M. Rueda <Oscar.Rueda@cruk.cam.ac.uk>
Description: Implementation of the classifier described in the paper 'Genome-driven integrated classification of breast cancer validated in over 7,500 samples' (Ali HR et al., Genome Biology 2014). It uses copy number and/or expression form breast cancer data, trains a pamr classifier (Tibshirani et al.) with the features available and predicts the iC10 group.
License: GPL-3
Depends: pamr, iC10TrainingData
Packaged: 2015-09-23 02:37:41 UTC; rueda01
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-09-23 08:05:08

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'iC10' ...
** package 'iC10' successfully unpacked and MD5 sums checked
** R
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'iC10'
    finding HTML links ... done
    compare                                 html  
    getCNfeatures                           html  
    getExpfeatures                          html  
    goodnessOfFit                           html  
    iC10-package                            html  
    iC10                                    html  
    matchFeatures                           html  
    normalizeFeatures                       html  
    plot.iC10                               html  
    print.iC10                              html  
    summary.iC10                            html  
** building package indices
** testing if installed package can be loaded
* DONE (iC10)
Making 'packages.html' ... done