immunoClust

Package: immunoClust
Type: Package
Title: immunoClust - Automated Pipeline for Population Detection in
Flow Cytometry
Version: 1.4.0
Date: 2016-03-23
Author: Till Soerensen <till-antoni.soerensen@charite.de>
Maintainer: Till Soerensen <till-antoni.soerensen@charite.de>
Depends: R (>= 3.2), methods, stats, graphics, grid, lattice, flowCore
Suggests: BiocStyle
Description: Model based clustering and meta-clustering of Flow
Cytometry Data
Collate: class.immunoClust.R plot.immunoClust.R splom.immunoClust.R
data.R process.R cell.clustering.R meta.clustering.R
meta.gating.R meta.export.R meta.plot.R clust.util.R
transform.R
biocViews: Clustering, FlowCytometry, CellBasedAssays
License: Artistic-2.0
NeedsCompilation: yes
Packaged: 2016-05-04 06:10:18 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'immunoClust' ...
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for GSL... yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c R_meta.cpp -o R_meta.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c R_model.cpp -o R_model.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c dist_mvn.cpp -o dist_mvn.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c em_meta.cpp -o em_meta.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c em_mvn.cpp -o em_mvn.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c em_mvt.cpp -o em_mvt.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c hc_meta.cpp -o hc_meta.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c hc_mvn.cpp -o hc_mvn.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c immunoClust.c -o immunoClust.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c meta_gpa.cpp -o meta_gpa.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c meta_scale.cpp -o meta_scale.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c normalize.cpp -o normalize.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c sub_mvn.cpp -o sub_mvn.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c util.cpp -o util.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c vs_htrans.cpp -o vs_htrans.o
g++ -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o immunoClust.so R_meta.o R_model.o dist_mvn.o em_meta.o em_mvn.o em_mvt.o hc_meta.o hc_mvn.o immunoClust.o meta_gpa.o meta_scale.o normalize.o sub_mvn.o util.o vs_htrans.o -lgsl -lgslcblas -lm -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/immunoClust/libs
** R
** data
** inst
** preparing package for lazy loading
Creating a generic function for 'splom' from package 'lattice' in package 'immunoClust'
** help
*** installing help indices
  converting help for package 'immunoClust'
    finding HTML links ... done
    cell.ClustData                          html  
    cell.EM                                 html  
    cell.FitModel                           html  
    cell.ME                                 html  
    cell.SubClustering                      html  
    cell.hclust                             html  
    cell.process                            html  
    cell.removed                            html  
    dat.exp                                 html  
    dat.fcs                                 html  
    dat.meta                                html  
    immunoClust-package                     html  
    immunoClust.object                      html  
    meta.ME                                 html  
    meta.SubClustering                      html  
    meta.clustering                         html  
    meta.export                             html  
    meta.exprs                              html  
    meta.hclust                             html  
    meta.normalize                          html  
    meta.plot                               html  
    meta.process                            html  
    plot.immunoClust                        html  
    splom.immunoClust                       html  
    trans.ApplyToData                       html  
    trans.FitToData                         html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (immunoClust)
Making 'packages.html' ... done