imputeLCMD

Package: imputeLCMD
Type: Package
Title: A collection of methods for left-censored missing data
imputation
Version: 2.0
Date: 2015-01-18
Author: Cosmin Lazar
Maintainer: Cosmin Lazar <vcosminlazar@gmail.com>
Description: The package contains a collection of functions for left-censored missing data imputation. Left-censoring is a special case of missing not at random (MNAR) mechanism that generates non-responses in proteomics experiments. The package also contains functions to artificially generate peptide/protein expression data (log-transformed) as random draws from a multivariate Gaussian distribution as well as a function to generate missing data (both randomly and non-randomly). For comparison reasons, the package also contains several wrapper functions for the imputation of non-responses that are missing at random. * New functionality has been added: a hybrid method that allows the imputation of missing values in a more complex scenario where the missing data are both MAR and MNAR.
License: GPL (>= 2)
Depends: R (>= 2.10), tmvtnorm, norm, pcaMethods, impute
Packaged: 2015-01-18 12:23:51 UTC; cosminlazar
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-01-19 07:09:10

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'imputeLCMD' ...
** package 'imputeLCMD' successfully unpacked and MD5 sums checked
** R
** data
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'imputeLCMD'
    finding HTML links ... done
    generate.ExpressionData                 html  
    generate.RollUpMap                      html  
    impute.MAR.MNAR                         html  
    impute.MAR                              html  
    finding level-2 HTML links ... done

    impute.MinDet                           html  
    impute.MinProb                          html  
    impute.QRILC                            html  
    impute.ZERO                             html  
    impute.wrapper.KNN                      html  
    impute.wrapper.MLE                      html  
    impute.wrapper.SVD                      html  
    insertMVs                               html  
    intensity_PXD000022                     html  
    intensity_PXD000052                     html  
    intensity_PXD000438                     html  
    intensity_PXD000501                     html  
    model.Selector                          html  
    pep2prot                                html  
** building package indices
** testing if installed package can be loaded
* DONE (imputeLCMD)
Making 'packages.html' ... done