inveRsion

Package: inveRsion
Type: Package
Title: Inversions in genotype data
Version: 1.20.0
Date: 2011-05-12
Author: Alejandro Caceres
Maintainer: Alejandro Caceres <acaceres@creal.cat>
Description: Package to find genetic inversions in genotype (SNP array) data.
License: GPL (>= 2)
LazyLoad: yes
Depends: methods, haplo.stats
Imports: graphics, methods, utils
biocViews: Microarray, SNP
Packaged: 2016-05-04 03:58:48 UTC; biocbuild
NeedsCompilation: yes

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'inveRsion' ...
** libs
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c init_inveRsion.c -o init_inveRsion.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c inversionModel.c -o inversionModel.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c writeGenoDat.c -o writeGenoDat.o
gcc -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o inveRsion.so init_inveRsion.o inversionModel.o writeGenoDat.o -L/home/ddbj/local/lib64/R/lib -lRlapack -L/home/ddbj/local/lib64/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/inveRsion/libs
** R
** data
** inst
** preparing package for lazy loading
Creating a generic function for 'plot' from package 'graphics' in package 'inveRsion'
** help
*** installing help indices
  converting help for package 'inveRsion'
    finding HTML links ... done
    GenoDat-class                           html  
    GenoDatROI-class                        html  
    HaploCode-class                         html  
    ac                                      html  
    accBic                                  html  
    accuracy-class                          html  
    codeHaplo                               html  
    gDat                                    html  
    getClassif-methods                      html  
    getInv-methods                          html  
    getROIs-methods                         html  
    hapCode                                 html  
    invList                                 html  
    inveRsion-internal                      html  
    inveRsion-package                       html  
    inversion-class                         html  
    inversionList-class                     html  
    listInv-methods                         html  
    scan-class                              html  
    scanInv                                 html  
    scanRes                                 html  
    setUpGenoDatFile                        html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (inveRsion)
Making 'packages.html' ... done