leapp

Package: leapp
Version: 1.2
Date: 2014-07-07
Title: latent effect adjustment after primary projection
Author: Yunting Sun <yunting.sun@gmail.com> , Nancy R.Zhang
<nzhang@stanford.edu>, Art B.Owen <owen@stanford.edu>
Maintainer: Yunting Sun <yunting.sun@gmail.com>
Description: These functions take a gene expression value matrix, a
primary covariate vector, an additional known covariates
matrix. A two stage analysis is applied to counter the effects
of latent variables on the rankings of hypotheses. The
estimation and adjustment of latent effects are proposed by
Sun, Zhang and Owen (2011). "leapp" is developed in the
context of microarray experiments, but may be used as a general
tool for high throughput data sets where dependence may be
involved.
Depends: R (>= 3.1.1), sva, MASS, corpcor
License: GPL (>= 2)
Packaged: 2014-07-13 18:34:14 UTC; ytsun
Repository: CRAN
Date/Publication: 2014-07-22 08:52:54
NeedsCompilation: no

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'leapp' ...
** package 'leapp' successfully unpacked and MD5 sums checked
** R
** data
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'leapp'
    finding HTML links ... done
    AlternateSVD                            html  
    FindAUC                                 html  
    FindFpr                                 html  
    FindPrec                                html  
    FindRec                                 html  
    FindTpr                                 html  
    IPOD                                    html  
    IPODFUN                                 html  
    Pvalue                                  html  
    ROCplot                                 html  
    leapp-package                           html  
    leapp                                   html  
    ridge                                   html  
    simdat                                  html  
** building package indices
** testing if installed package can be loaded
* DONE (leapp)
Making 'packages.html' ... done