Last data update: 2014.03.03

libamtrack

Package: libamtrack
Version: 0.6.3
Date: 2015-12-12
Title: Computational Routines for Proton and Ion Radiotherapy
Author: Steffen Greilich and the libamtrack team
Maintainer: Steffen Greilich <s.greilich@dkfz.de>
Depends: R (>= 2.11.0)
Suggests: lattice
SystemRequirements: Gnu Scientific Library version >= 1.8
Description: R interface to the open-source, ANSI C library 'libamtrack' (http://libamtrack.dkfz.org). 'libamtrack' provides computational routines for the prediction of detector response and radiobiological efficiency in heavy charged particle beams. It is designed for research in proton and ion dosimetry and radiotherapy. 'libamtrack' also includes many auxiliary physics routines for proton and ion beams. Original package and C-to-R conversion routines developed by Felix A. Klein.
URL: libamtrack.dkfz.org
License: GPL (>= 3)
NeedsCompilation: yes
Packaged: 2015-12-12 10:41:34 UTC; greilich
Repository: CRAN
Date/Publication: 2015-12-12 18:49:11

● 0 images, 100 functions, 0 datasets
● Reverse Depends: 0

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'libamtrack' ...
** package 'libamtrack' successfully unpacked and MD5 sums checked
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -E
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether f95 accepts -g... yes
checking for gsl-config... /usr/bin/gsl-config
checking if GSL version >= 1.8... yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/include -I. -DNDEBUG -I/usr/local/include   -I/usr/include -I. -DNDEBUG -fpic  -g -O2  -c AT.c -o AT.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/include -I. -DNDEBUG -I/usr/local/include   -I/usr/include -I. -DNDEBUG -fpic  -g -O2  -c AT_Algorithms_CPP.c -o AT_Algorithms_CPP.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/include -I. -DNDEBUG -I/usr/local/include   -I/usr/include -I. -DNDEBUG -fpic  -g -O2  -c AT_Algorithms_GSM.c -o AT_Algorithms_GSM.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/include -I. -DNDEBUG -I/usr/local/include   -I/usr/include -I. -DNDEBUG -fpic  -g -O2  -c AT_Algorithms_IGK.c -o AT_Algorithms_IGK.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/include -I. -DNDEBUG -I/usr/local/include   -I/usr/include -I. -DNDEBUG -fpic  -g -O2  -c AT_CernlibFuns.c -o AT_CernlibFuns.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/include -I. -DNDEBUG -I/usr/local/include   -I/usr/include -I. -DNDEBUG -fpic  -g -O2  -c AT_Constants.c -o AT_Constants.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/include -I. -DNDEBUG -I/usr/local/include   -I/usr/include -I. -DNDEBUG -fpic  -g -O2  -c AT_DataMaterial.c -o AT_DataMaterial.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/include -I. -DNDEBUG -I/usr/local/include   -I/usr/include -I. -DNDEBUG -fpic  -g -O2  -c AT_DataParticle.c -o AT_DataParticle.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/include -I. -DNDEBUG -I/usr/local/include   -I/usr/include -I. -DNDEBUG -fpic  -g -O2  -c AT_DataRange.c -o AT_DataRange.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/include -I. -DNDEBUG -I/usr/local/include   -I/usr/include -I. -DNDEBUG -fpic  -g -O2  -c AT_ElectronRange.c -o AT_ElectronRange.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/include -I. -DNDEBUG -I/usr/local/include   -I/usr/include -I. -DNDEBUG -fpic  -g -O2  -c AT_EnergyLoss.c -o AT_EnergyLoss.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/include -I. -DNDEBUG -I/usr/local/include   -I/usr/include -I. -DNDEBUG -fpic  -g -O2  -c AT_Error.c -o AT_Error.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/include -I. -DNDEBUG -I/usr/local/include   -I/usr/include -I. -DNDEBUG -fpic  -g -O2  -c AT_GammaResponse.c -o AT_GammaResponse.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/include -I. -DNDEBUG -I/usr/local/include   -I/usr/include -I. -DNDEBUG -fpic  -g -O2  -c AT_Histograms.c -o AT_Histograms.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/include -I. -DNDEBUG -I/usr/local/include   -I/usr/include -I. -DNDEBUG -fpic  -g -O2  -c AT_KatzModel.c -o AT_KatzModel.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/include -I. -DNDEBUG -I/usr/local/include   -I/usr/include -I. -DNDEBUG -fpic  -g -O2  -c AT_MultipleCoulombScattering.c -o AT_MultipleCoulombScattering.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/include -I. -DNDEBUG -I/usr/local/include   -I/usr/include -I. -DNDEBUG -fpic  -g -O2  -c AT_NumericalRoutines.c -o AT_NumericalRoutines.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/include -I. -DNDEBUG -I/usr/local/include   -I/usr/include -I. -DNDEBUG -fpic  -g -O2  -c AT_PhysicsRoutines.c -o AT_PhysicsRoutines.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/include -I. -DNDEBUG -I/usr/local/include   -I/usr/include -I. -DNDEBUG -fpic  -g -O2  -c AT_RDD.c -o AT_RDD.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/include -I. -DNDEBUG -I/usr/local/include   -I/usr/include -I. -DNDEBUG -fpic  -g -O2  -c AT_RDD_ExtendedTarget.c -o AT_RDD_ExtendedTarget.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/include -I. -DNDEBUG -I/usr/local/include   -I/usr/include -I. -DNDEBUG -fpic  -g -O2  -c AT_RDD_ShellAveraged.c -o AT_RDD_ShellAveraged.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/include -I. -DNDEBUG -I/usr/local/include   -I/usr/include -I. -DNDEBUG -fpic  -g -O2  -c AT_RDD_Simple.c -o AT_RDD_Simple.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/include -I. -DNDEBUG -I/usr/local/include   -I/usr/include -I. -DNDEBUG -fpic  -g -O2  -c AT_RDD_Tabulated.c -o AT_RDD_Tabulated.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/include -I. -DNDEBUG -I/usr/local/include   -I/usr/include -I. -DNDEBUG -fpic  -g -O2  -c AT_R_Wrapper.c -o AT_R_Wrapper.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/include -I. -DNDEBUG -I/usr/local/include   -I/usr/include -I. -DNDEBUG -fpic  -g -O2  -c AT_SPC.c -o AT_SPC.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/include -I. -DNDEBUG -I/usr/local/include   -I/usr/include -I. -DNDEBUG -fpic  -g -O2  -c AT_StoppingPower.c -o AT_StoppingPower.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/include -I. -DNDEBUG -I/usr/local/include   -I/usr/include -I. -DNDEBUG -fpic  -g -O2  -c AT_StoppingPowerData.c -o AT_StoppingPowerData.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/include -I. -DNDEBUG -I/usr/local/include   -I/usr/include -I. -DNDEBUG -fpic  -g -O2  -c AT_StoppingPowerDataBethe.c -o AT_StoppingPowerDataBethe.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/include -I. -DNDEBUG -I/usr/local/include   -I/usr/include -I. -DNDEBUG -fpic  -g -O2  -c AT_StoppingPowerDataFromFile.c -o AT_StoppingPowerDataFromFile.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/include -I. -DNDEBUG -I/usr/local/include   -I/usr/include -I. -DNDEBUG -fpic  -g -O2  -c AT_StoppingPowerDataICRU.c -o AT_StoppingPowerDataICRU.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/include -I. -DNDEBUG -I/usr/local/include   -I/usr/include -I. -DNDEBUG -fpic  -g -O2  -c AT_StoppingPowerDataPSTAR.c -o AT_StoppingPowerDataPSTAR.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/include -I. -DNDEBUG -I/usr/local/include   -I/usr/include -I. -DNDEBUG -fpic  -g -O2  -c AT_SuccessiveConvolutions.c -o AT_SuccessiveConvolutions.o
f95   -fpic  -g -O2  -c CERNLIBFUNS.f -o CERNLIBFUNS.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/include -I. -DNDEBUG -I/usr/local/include   -I/usr/include -I. -DNDEBUG -fpic  -g -O2  -c hardcoded_wrapper.c -o hardcoded_wrapper.o
gcc -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o libamtrack.so AT.o AT_Algorithms_CPP.o AT_Algorithms_GSM.o AT_Algorithms_IGK.o AT_CernlibFuns.o AT_Constants.o AT_DataMaterial.o AT_DataParticle.o AT_DataRange.o AT_ElectronRange.o AT_EnergyLoss.o AT_Error.o AT_GammaResponse.o AT_Histograms.o AT_KatzModel.o AT_MultipleCoulombScattering.o AT_NumericalRoutines.o AT_PhysicsRoutines.o AT_RDD.o AT_RDD_ExtendedTarget.o AT_RDD_ShellAveraged.o AT_RDD_Simple.o AT_RDD_Tabulated.o AT_R_Wrapper.o AT_SPC.o AT_StoppingPower.o AT_StoppingPowerData.o AT_StoppingPowerDataBethe.o AT_StoppingPowerDataFromFile.o AT_StoppingPowerDataICRU.o AT_StoppingPowerDataPSTAR.o AT_SuccessiveConvolutions.o CERNLIBFUNS.o hardcoded_wrapper.o -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm -lgfortran -lm -lquadmath -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/libamtrack/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'libamtrack'
    finding HTML links ... done
    AT.A.from.particle.no                   html  
    AT.CPPSC.alpha.and.beta                 html  
    AT.CSDA.range.g.cm2                     html  
    AT.D.RDD.Gy                             html  
    AT.E.MeV.u.from.momentum.MeV.c.u        html  
    AT.E.from.beta                          html  
    AT.FLUKA.particle.name.to.libamtrack.particle.name
                                            html  
    AT.FLUKA.read.USRBIN.mesh               html  
    AT.FLUKA.read.USRBIN.regs               html  
    AT.FLUKA.read.USRTRACK                  html  
    AT.Gauss.IDF                            html  
    AT.Gauss.PDF                            html  
    AT.I.eV.from.composition                html  
    AT.Landau.IDF                           html  
    AT.Landau.PDF                           html  
    AT.Mass.Stopping.Power                  html  
    AT.Mass.Stopping.Power.with.no          html  
    AT.Rutherford.SDCS                      html  
    AT.SPC.convert.to.DDD                   html  
    AT.SPC.export.DEDX                      html  
    AT.SPC.get                              html  
    AT.SPC.get.list                         html  
    AT.SPC.interpolate                      html  
    AT.SPC.read                             html  
    AT.SPC.spectrum.at.depth.g.cm2          html  
    AT.SPC.spectrum.at.depth.step           html  
    AT.SPC.tapply                           html  
    AT.Stopping.Power                       html  
    AT.Stopping.Power.with.no               html  
    AT.Vavilov.IDF                          html  
    AT.Vavilov.PDF                          html  
    AT.Z.from.particle.no                   html  
    AT.add.leading.zeros                    html  
    AT.add.trailing.zeros                   html  
    AT.atomic.weight.from.Z                 html  
    AT.average.A.from.composition           html  
    AT.average.Z.from.composition           html  
    AT.beam.par.physical.to.technical       html  
    AT.beam.par.technical.to.physical       html  
    AT.beta.from.E                          html  
    AT.dose.Gy.from.fluence.cm2             html  
    AT.dose.weighted.E.MeV.u                html  
    AT.dose.weighted.LET.MeV.cm2.g          html  
    AT.effective.Z.from.composition         html  
    AT.effective.charge.from.E.MeV.u        html  
    AT.electron.density.m3                  html  
    AT.electron.density.m3.from.composition
                                            html  
    AT.electron.density.m3.from.material.no
                                            html  
    AT.energy.loss.from.lambda.gauss        html  
    AT.energy.loss.from.lambda.landau       html  
    AT.energy.loss.from.lambda.vavilov      html  
    AT.energy.straggling.MeV2.cm2.g         html  
    AT.energy.straggling.after.slab.E.MeV.u
                                            html  
    AT.fluence.cm2.from.dose.Gy             html  
    AT.fluence.weighted.E.MeV.u             html  
    AT.fluence.weighted.LET.MeV.cm2.g       html  
    AT.gamma.from.E                         html  
    AT.gamma.response                       html  
    AT.get.materials.data                   html  
    AT.inverse.gamma.response               html  
    AT.kappa                                html  
    AT.lambda.landau.from.energy.loss       html  
    AT.lambda.max                           html  
    AT.lambda.mean                          html  
    AT.lambda.vavilov.from.energy.loss      html  
    AT.material.name.from.material.no       html  
    AT.material.no.from.material.name       html  
    AT.max.E.transfer.MeV                   html  
    AT.max.E.transfer.MeV.new               html  
    AT.max.electron.ranges.m                html  
    AT.mean.energy.loss.keV                 html  
    AT.mean.number.of.tracks.contrib        html  
    AT.momentum.MeV.c.u.from.E.MeV.u        html  
    AT.nuclear.spin.from.particle.no        html  
    AT.particle.name.from.particle.no       html  
    AT.particle.no.from.Z.and.A             html  
    AT.particle.no.from.particle.name       html  
    AT.r.RDD.m                              html  
    AT.run.CPPSC.method                     html  
    AT.run.GSM.method                       html  
    AT.run.IGK.method                       html  
    AT.set.user.material                    html  
    AT.set.user.material.from.composition   html  
    AT.stopping.power.ratio                 html  
    AT.total.D.Gy                           html  
    AT.total.fluence.cm2                    html  
    AT.translate.dose.into.DSB.distribution
                                            html  
    AT.xi.keV                               html  
    E.MeV.u                                 html  
    er.model                                html  
    fluence.cm2.or.dose.Gy                  html  
    gamma.model                             html  
    libamtrack-package                      html  
    material.name                           html  
    material.no                             html  
    number.of.field.components              html  
    particle.name                           html  
    particle.no                             html  
    rdd.model                               html  
    stopping.power.source.no                html  
** building package indices
** testing if installed package can be loaded
* DONE (libamtrack)
Making 'packages.html' ... done

Created & Maintained by Osamu Ogasawara (osamu.ogasawara@gmail.com) and IMSBIO