Last data update: 2014.03.03
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linkcomm
Package: linkcomm
Type: Package
Title: Tools for Generating, Visualizing, and Analysing Link
Communities in Networks
Version: 1.0-11
Date: 2011-05-27
Author: Alex T. Kalinka <alex.t.kalinka@gmail.com>, with contributions from Alain Guenoche
Maintainer: Alex T. Kalinka <alex.t.kalinka@gmail.com>
Description: Link communities reveal the nested and overlapping structure in networks, and uncover the key nodes that form connections to multiple communities. linkcomm provides a set of tools for generating, visualizing, and analysing link communities in networks of arbitrary size and type. The linkcomm package also includes tools for generating, visualizing, and analysing Overlapping Cluster Generator (OCG) communities.
Depends: igraph, RColorBrewer
Imports: dynamicTreeCut, grid, utils
Suggests: fastcluster
License: GPL (>= 2)
LazyLoad: yes
LazyData: yes
Packaged: 2014-08-13 08:19:15 UTC; alexk
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-08-13 19:00:50
Install log
* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'linkcomm' ...
** package 'linkcomm' successfully unpacked and MD5 sums checked
** libs
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c OCG_algorithm.c -o OCG_algorithm.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c edge_duplicates.cpp -o edge_duplicates.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c linkcomm_edgesims.cpp -o linkcomm_edgesims.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c linkcomm_edgesims_all.cpp -o linkcomm_edgesims_all.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c linkcomm_functions.cpp -o linkcomm_functions.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c linkcomm_hclust.cpp -o linkcomm_hclust.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c linkcomm_linkdensities.cpp -o linkcomm_linkdensities.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c linkcommhclust_order.cpp -o linkcommhclust_order.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c read_OCG.cpp -o read_OCG.o
g++ -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o linkcomm.so OCG_algorithm.o edge_duplicates.o linkcomm_edgesims.o linkcomm_edgesims_all.o linkcomm_functions.o linkcomm_hclust.o linkcomm_linkdensities.o linkcommhclust_order.o read_OCG.o -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/linkcomm/libs
** R
** data
*** moving datasets to lazyload DB
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
converting help for package 'linkcomm'
finding HTML links ... done
LinkDensities html
corLinkcommCentrality html
cutDendrogramAt html
edge.duplicates html
get.community.overlaps html
get.shared.nodes html
getAllNestedComm html
getClusterRelatedness html
getCommunityCentrality html
getCommunityConnectedness html
getCommunityMatrix html
getEdgesIn html
getLinkCommunities html
finding level-2 HTML links ... done
getNestedHierarchies html
getNodesIn html
getOCG.clusters html
graph.feature html
human_pp html
integer.edgelist html
karate html
layout.spencer.circle html
lesmiserables html
linkcomm-package html
linkcomm2clustnsee html
linkcomm2cytoscape html
meta.communities html
newLinkCommsAt html
numberEdgesIn html
orderCommunities html
plot.OCG html
plot.linkcomm html
plotLinkCommDend html
plotLinkCommGraph html
plotLinkCommMembers html
plotLinkCommSumm html
plotLinkCommSummComm html
plotOCGraph html
pp_rnapol html
print.OCG html
print.linkcomm html
read.OCG html
weighted html
which.communities html
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (linkcomm)
Making 'packages.html' ... done
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