lme4

Package: lme4
Version: 1.1-12
Title: Linear Mixed-Effects Models using 'Eigen' and S4
Authors@R: c(person("Douglas","Bates", role="aut"),
person("Martin","Maechler", role="aut"),
person("Ben","Bolker",email="bbolker+lme4@gmail.com", role=c("aut","cre")),
person("Steven","Walker",role="aut"),
person("Rune Haubo Bojesen","Christensen", role="ctb"),
person("Henrik","Singmann", role="ctb"),
person("Bin", "Dai", role="ctb"),
person("Gabor", "Grothendieck", role="ctb"),
person("Peter", "Green", role="ctb"))
Contact: LME4 Authors <lme4-authors@lists.r-forge.r-project.org>
Description: Fit linear and generalized linear mixed-effects models.
The models and their components are represented using S4 classes and
methods. The core computational algorithms are implemented using the
'Eigen' C++ library for numerical linear algebra and 'RcppEigen' "glue".
Depends: R (>= 3.0.2), Matrix (>= 1.1.1), methods, stats
LinkingTo: Rcpp (>= 0.10.5), RcppEigen
Imports: graphics, grid, splines, utils, parallel, MASS, lattice, nlme
(>= 3.1-123), minqa (>= 1.1.15), nloptr (>= 1.0.4)
Suggests: knitr, boot, PKPDmodels, MEMSS, testthat (>= 0.8.1), ggplot2,
mlmRev, optimx (>= 2013.8.6), gamm4, pbkrtest, HSAUR2, numDeriv
VignetteBuilder: knitr
LazyData: yes
License: GPL (>= 2)
URL: https://github.com/lme4/lme4/ http://lme4.r-forge.r-project.org/
BugReports: https://github.com/lme4/lme4/issues
NeedsCompilation: yes
Packaged: 2016-04-16 03:11:44 UTC; bolker
Author: Douglas Bates [aut],
Martin Maechler [aut],
Ben Bolker [aut, cre],
Steven Walker [aut],
Rune Haubo Bojesen Christensen [ctb],
Henrik Singmann [ctb],
Bin Dai [ctb],
Gabor Grothendieck [ctb],
Peter Green [ctb]
Maintainer: Ben Bolker <bbolker+lme4@gmail.com>
Repository: CRAN
Date/Publication: 2016-04-16 20:40:11

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'lme4' ...
** package 'lme4' successfully unpacked and MD5 sums checked
** libs
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppEigen/include"  -DNDEBUG -DEIGEN_DONT_VECTORIZE -fpic  -g -O2  -c external.cpp -o external.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppEigen/include"  -DNDEBUG -DEIGEN_DONT_VECTORIZE -fpic  -g -O2  -c glmFamily.cpp -o glmFamily.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppEigen/include"  -DNDEBUG -DEIGEN_DONT_VECTORIZE -fpic  -g -O2  -c mcmcsamp.cpp -o mcmcsamp.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppEigen/include"  -DNDEBUG -DEIGEN_DONT_VECTORIZE -fpic  -g -O2  -c optimizer.cpp -o optimizer.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppEigen/include"  -DNDEBUG -DEIGEN_DONT_VECTORIZE -fpic  -g -O2  -c predModule.cpp -o predModule.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppEigen/include"  -DNDEBUG -DEIGEN_DONT_VECTORIZE -fpic  -g -O2  -c respModule.cpp -o respModule.o
g++ -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o lme4.so external.o glmFamily.o mcmcsamp.o optimizer.o predModule.o respModule.o -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/lme4/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'lme4'
    finding HTML links ... done
    Arabidopsis                             html  
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    getME                                   html  
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    glmer.nb                                html  
Rd warning: /tmp/Rtmp3aTI6S/R.INSTALL3d29477950a1/lme4/man/glmer.nb.Rd:9: missing file link 'theta.ml'
Rd warning: /tmp/Rtmp3aTI6S/R.INSTALL3d29477950a1/lme4/man/glmer.nb.Rd:31: missing file link 'theta.ml'
Rd warning: /tmp/Rtmp3aTI6S/R.INSTALL3d29477950a1/lme4/man/glmer.nb.Rd:54: missing file link 'theta.ml'
    glmerLaplaceHandle                      html  
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    grouseticks                             html  
    hatvalues.merMod                        html  
    isNested                                html  
    isREML                                  html  
    lmList                                  html  
    lmList4-class                           html  
    lmResp-class                            html  
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    lmer                                    html  
    lmerControl                             html  
    finding level-2 HTML links ... done

    merMod-class                            html  
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    mkReTrms                                html  
    mkRespMod                               html  
    mkSimulationTemplate                    html  
    mkVarCorr                               html  
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    modular                                 html  
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    nlformula                               html  
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    nloptwrap                               html  
    nobars                                  html  
    plot.lmList4                            html  
    plot.merMod                             html  
    plots.thpr                              html  
    predict.merMod                          html  
    profile-methods                         html  
    pvalues                                 html  
    ranef                                   html  
    rePos-class                             html  
    rePos                                   html  
    refit                                   html  
    refitML                                 html  
    residuals.merMod                        html  
    sigma                                   html  
    simulate.merMod                         html  
    sleepstudy                              html  
    subbars                                 html  
    troubleshooting                         html  
    utilities                               html  
    varianceProf                            html  
    vcconv                                  html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (lme4)
Making 'packages.html' ... done