Last data update: 2014.03.03
|
mQTL.NMR
Package: mQTL.NMR
Type: Package
Title: Metabolomic Quantitative Trait Locus Mapping for 1H NMR data
Version: 1.6.0
Date: 2015-04-09
Author: Lyamine Hedjazi and Jean-Baptiste Cazier
Maintainer: Lyamine Hedjazi <mqtl@ican-institute.org>
Description: mQTL.NMR provides a complete mQTL analysis pipeline for 1H NMR data. Distinctive features include normalisation using most-used approaches, peak alignment using RSPA approach, dimensionality reduction using SRV and binning approaches, and mQTL analysis for animal and human cohorts.
License: Artistic-2.0
URL: http://www.ican-institute.org/tools/
LazyLoad: yes
LazyData: yes
NeedsCompilation: yes
biocViews: Cheminformatics, Metabolomics, Genetics, SNP
Depends: R (>= 2.15.0)
Imports: qtl, GenABEL, MASS, outliers, graphics, stats, utils
Suggests: BiocStyle
Packaged: 2016-05-04 05:37:08 UTC; biocbuild
● BiocViews: Cheminformatics, Genetics, Metabolomics, SNP
●
5 images,
31 functions,
0 datasets
●
Reverse Depends: 0
Install log
* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'mQTL.NMR' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
converting help for package 'mQTL.NMR'
finding HTML links ... done
SRV html
SRV.plot html
SRV_lod.plot html
Top_SRV.plot html
alignSp html
align_mQTL html
attachSegments html
circle_mQTL html
configureRSPA html
format_mGWA html
format_mQTL html
load_datafiles html
load_demo_data html
mQTL.NMR-package html
matchSegments html
normalise html
normalise_mQTL html
peakPeaks html
post_mQTL html
ppersp html
pplot html
pre_mQTL html
process_mGWA html
process_mQTL html
segmentateSp html
selectRefSp html
setupRSPA html
sgolay html
sgolayDeriv html
simple.plot html
summary_mQTL html
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (mQTL.NMR)
Making 'packages.html' ... done
|