Last data update: 2014.03.03
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macat
Package: macat
Title: MicroArray Chromosome Analysis Tool
Version: 1.46.0
Date: 2014-01-15
Author: Benjamin Georgi, Matthias Heinig, Stefan Roepcke, Sebastian
Schmeier, Joern Toedling
Depends: Biobase, annotate
Suggests: hgu95av2.db, stjudem
Description: This library contains functions to investigate links
between differential gene expression and the chromosomal
localization of the genes. MACAT is motivated by the common
observation of phenomena involving large chromosomal regions
in tumor cells. MACAT is the implementation of a statistical
approach for identifying significantly differentially
expressed chromosome regions. The functions have been tested
on a publicly available data set about acute lymphoblastic
leukemia (Yeoh et al.Cancer Cell 2002), which is provided in
the library 'stjudem'.
Maintainer: Joern Toedling <jtoedling@yahoo.de>
License: Artistic-2.0
biocViews: Microarray, DifferentialExpression, Visualization
Reference: Toedling J, Schmeier S, Heinig M, Georgi B, Roepcke S
(2005). MACAT - MicroArray Chromosome Analysis Tool.
Bioinformatics. 21(9):2112--2113.
NeedsCompilation: no
Packaged: 2016-05-04 02:43:27 UTC; biocbuild
Install log
* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'macat' ...
** R
** data
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
converting help for package 'macat'
finding HTML links ... done
buildMACAT html
compute_sliding html
discreteKernelize html
discretize html
discretizeAll html
discretize_tscores html
evalScoring html
evaluateParameters html
get_results html
html html
kernelize html
kernelizeAll html
kernelizeToPython html
kernels html
loaddatapkg html
macat-internal html
plot_MACATevalScoring html
preprocessedLoader html
pythondata html
scoring html
stjd html
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (macat)
Making 'packages.html' ... done
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