made4

Package: made4
Version: 1.46.0
Title: Multivariate analysis of microarray data using ADE4
Author: Aedin Culhane
Maintainer: Aedin Culhane <Aedin@jimmy.harvard.edu>
Depends: ade4, RColorBrewer, gplots, scatterplot3d
Suggests: affy
Description: Multivariate data analysis and graphical display of
microarray data. Functions include between group analysis and
coinertia analysis. It contains functions that require ADE4.
Reference: Culhane AC, Thioulouse J, Perriere G, Higgins DG. (2005)
MADE4: an R package for multivariate analysis of gene
expression data.Bioinformatics. 21(11):2789-90. Culhane AC,
Thioulouse J (2006) A multivariate approach to integrating
datasets using made4 and ade4. R News: Special Issue on
Bioconductor December.
License: Artistic-2.0
URL: http://www.hsph.harvard.edu/aedin-culhane/
biocViews: Clustering, Classification, MultipleComparison
NeedsCompilation: no
Packaged: 2016-05-04 02:44:01 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'made4' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'made4'
    finding HTML links ... done
    NCI60                                   html  
    array2ade4                              html  
Rd warning: /tmp/RtmpA3z9mZ/R.INSTALL56f203b6542/made4/man/array2ade4.Rd:15: missing file link 'ExpressionSet-class'
Rd warning: /tmp/RtmpA3z9mZ/R.INSTALL56f203b6542/made4/man/array2ade4.Rd:30: missing file link 'ExpressionSet-class'
    bet.coinertia                           html  
Rd warning: /tmp/RtmpA3z9mZ/R.INSTALL56f203b6542/made4/man/bet.coinertia.Rd:14: missing file link 'ExpressionSet-class'
Rd warning: /tmp/RtmpA3z9mZ/R.INSTALL56f203b6542/made4/man/bet.coinertia.Rd:21: missing file link 'ExpressionSet-class'
Rd warning: /tmp/RtmpA3z9mZ/R.INSTALL56f203b6542/made4/man/bet.coinertia.Rd:49: missing file link 'bca'
Rd warning: /tmp/RtmpA3z9mZ/R.INSTALL56f203b6542/made4/man/bet.coinertia.Rd:52: missing file link 'bca'
    between.graph                           html  
    bga                                     html  
Rd warning: /tmp/RtmpA3z9mZ/R.INSTALL56f203b6542/made4/man/bga.Rd:16: missing file link 'ExpressionSet-class'
Rd warning: /tmp/RtmpA3z9mZ/R.INSTALL56f203b6542/made4/man/bga.Rd:42: missing file link 'bca'
Rd warning: /tmp/RtmpA3z9mZ/R.INSTALL56f203b6542/made4/man/bga.Rd:117: missing file link 'bca'
Rd warning: /tmp/RtmpA3z9mZ/R.INSTALL56f203b6542/made4/man/bga.Rd:123: missing file link 'bca'
    bga.jackknife                           html  
Rd warning: /tmp/RtmpA3z9mZ/R.INSTALL56f203b6542/made4/man/bga.jackknife.Rd:36: missing file link 'bca'
Rd warning: /tmp/RtmpA3z9mZ/R.INSTALL56f203b6542/made4/man/bga.jackknife.Rd:37: missing file link 'plot.bga'
    bga.suppl                               html  
Rd warning: /tmp/RtmpA3z9mZ/R.INSTALL56f203b6542/made4/man/bga.suppl.Rd:13: missing file link 'ExpressionSet-class'
Rd warning: /tmp/RtmpA3z9mZ/R.INSTALL56f203b6542/made4/man/bga.suppl.Rd:19: missing file link 'ExpressionSet-class'
Rd warning: /tmp/RtmpA3z9mZ/R.INSTALL56f203b6542/made4/man/bga.suppl.Rd:45: missing file link 'plot.bga'
Rd warning: /tmp/RtmpA3z9mZ/R.INSTALL56f203b6542/made4/man/bga.suppl.Rd:52: missing file link 'bca'
Rd warning: /tmp/RtmpA3z9mZ/R.INSTALL56f203b6542/made4/man/bga.suppl.Rd:62: missing file link 'bca'
Rd warning: /tmp/RtmpA3z9mZ/R.INSTALL56f203b6542/made4/man/bga.suppl.Rd:63: missing file link 'plot.bga'
    checkfac                                html  
    chime3D                                 html  
    cia                                     html  
Rd warning: /tmp/RtmpA3z9mZ/R.INSTALL56f203b6542/made4/man/cia.Rd:14: missing file link 'ExpressionSet-class'
Rd warning: /tmp/RtmpA3z9mZ/R.INSTALL56f203b6542/made4/man/cia.Rd:20: missing file link 'ExpressionSet-class'
    commonMap                               html  
    comparelists                            html  
    do3d                                    html  
    dudi.rwcoa                              html  
    forrwcoa                                html  
    genes                                   html  
    genes1d                                 html  
    getcol                                  html  
    getdata                                 html  
Rd warning: /tmp/RtmpA3z9mZ/R.INSTALL56f203b6542/made4/man/getdata.Rd:14: missing file link 'ExpressionSet-class'
Rd warning: /tmp/RtmpA3z9mZ/R.INSTALL56f203b6542/made4/man/getdata.Rd:25: missing file link 'ExpressionSet-class'
    graph1D                                 html  
    heatplot                                html  
Rd warning: /tmp/RtmpA3z9mZ/R.INSTALL56f203b6542/made4/man/heatplot.Rd:14: missing file link 'ExpressionSet-class'
    html3D                                  html  
    jmol3D                                  html  
    khan                                    html  
    ord                                     html  
Rd warning: /tmp/RtmpA3z9mZ/R.INSTALL56f203b6542/made4/man/ord.Rd:13: missing file link 'ExpressionSet-class'
    overview                                html  
Rd warning: /tmp/RtmpA3z9mZ/R.INSTALL56f203b6542/made4/man/overview.Rd:10: missing file link 'ExpressionSet-class'
    plotarrays                              html  
Rd warning: /tmp/RtmpA3z9mZ/R.INSTALL56f203b6542/made4/man/plotarrays.Rd:45: missing file link 's.groups'
Rd warning: /tmp/RtmpA3z9mZ/R.INSTALL56f203b6542/made4/man/plotarrays.Rd:46: missing file link 's.match.col'
    plotgenes                               html  
    prettyDend                              html  
Rd warning: /tmp/RtmpA3z9mZ/R.INSTALL56f203b6542/made4/man/prettyDend.Rd:11: missing file link 'ExpressionSet-class'
    randomiser                              html  
    s.var                                   html  
Rd warning: /tmp/RtmpA3z9mZ/R.INSTALL56f203b6542/made4/man/s.var.Rd:65: missing file link 'plot.bga'
Rd warning: /tmp/RtmpA3z9mZ/R.INSTALL56f203b6542/made4/man/s.var.Rd:65: missing file link 'plot.cia'
    sumstats                                html  
    suppl                                   html  
Rd warning: /tmp/RtmpA3z9mZ/R.INSTALL56f203b6542/made4/man/suppl.Rd:17: missing file link 'ExpressionSet-class'
Rd warning: /tmp/RtmpA3z9mZ/R.INSTALL56f203b6542/made4/man/suppl.Rd:38: missing file link 'plot.bga'
Rd warning: /tmp/RtmpA3z9mZ/R.INSTALL56f203b6542/made4/man/suppl.Rd:47: missing file link 'bca'
Rd warning: /tmp/RtmpA3z9mZ/R.INSTALL56f203b6542/made4/man/suppl.Rd:47: missing file link 'plot.bga'
    topgenes                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (made4)
Making 'packages.html' ... done