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Last data update: 2014.03.03

manta

Package: manta
Version: 1.18.0
Date: 2012-03-15
Title: Microbial Assemblage Normalized Transcript Analysis
Author: Ginger Armbrust, Adrian Marchetti
Maintainer: Chris Berthiaume <chrisbee@uw.edu>, Adrian Marchetti
<amarchetti@unc.edu>
Depends: R (>= 1.8.0), methods, edgeR (>= 2.5.13)
Imports: Hmisc, caroline (>= 0.6.6)
Suggests: RSQLite, plotrix
Description: Tools for robust comparative metatranscriptomics.
License: Artistic-2.0
URL: http://manta.ocean.washington.edu/
biocViews: DifferentialExpression, RNASeq, Genetics, GeneExpression,
Sequencing, QualityControl, DataImport, Visualization
NeedsCompilation: no
Packaged: 2016-05-04 04:22:35 UTC; biocbuild

● BiocViews: DataImport, DifferentialExpression, GeneExpression, Genetics, QualityControl, RNASeq, Sequencing, Visualization
● 2 images, 20 functions, 0 datasets
● Reverse Depends: 0

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'manta' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'manta'
    finding HTML links ... done
    cmdArgsToVariables                      html  
    collapseRepliCounts                     html  
    compbiasPlot                            html  
    compbiasTest                            html  
    generateWeights                         html  
    in2manta                                html  
    makeSampleDF                            html  
    manta-class                             html  
    manta                                   html  
    meta2counts                             html  
    metataxa2subcounts                      html  
    nf2nr                                   html  
    normfact2absTMM                         html  
    nr                                      html  
    outliers                                html  
    plot.manta                              html  
    pplacer2manta                           html  
    readSeastar                             html  
    seastar2counts                          html  
    summary.manta                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (manta)
Making 'packages.html' ... done