mdgsa

Package: mdgsa
Type: Package
Title: Multi Dimensional Gene Set Analysis.
Version: 1.4.2
Date: 2013-09-26
Author: David Montaner <dmontaner@cipf.es>
Maintainer: David Montaner <dmontaner@cipf.es>
URL: https://github.com/dmontaner/mdgsa, http://www.dmontaner.com
Description: Functions to preform a Gene Set Analysis in several
genomic dimensions. Including methods for miRNAs.
License: GPL
LazyLoad: yes
LazyData: FALSE
Depends: R (>= 2.14)
Imports: AnnotationDbi, DBI, GO.db, KEGG.db, cluster, Matrix
Suggests: BiocStyle, knitr, rmarkdown, limma, ALL, hgu95av2.db, RUnit,
BiocGenerics
VignetteBuilder: knitr
biocViews: GeneSetEnrichment, Annotation, Pathways, GO
NeedsCompilation: no
Packaged: 2016-05-16 05:06:19 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'mdgsa' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'mdgsa'
    finding HTML links ... done
    annotFilter                             html  
    annotList2mat                           html  
    annotMat2list                           html  
    getGOnames                              html  
    getKEGGnames                            html  
    getOntology                             html  
    goLeaves                                html  
    indexTransform                          html  
    mdGsa                                   html  
    mdPat                                   html  
    plotMdGsa                               html  
    propagateGO                             html  
    pval2index                              html  
    revList                                 html  
    splitOntologies                         html  
    transferIndex                           html  
    uvGsa                                   html  
    uvPat                                   html  
    uvSignif                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (mdgsa)
Making 'packages.html' ... done