metaMS

Package: metaMS
Type: Package
Title: MS-based metabolomics annotation pipeline
Version: 1.8.0
Authors@R: c(person("Ron", "Wehrens", role = c("aut", "cre"), comment =
"author of GC-MS part", email = "ron.wehrens@gmail.com"),
person("Pietro", "Franceschi", role = "aut", comment = "author
of LC-MS part"), person("Nir", "Shahaf", role = "ctb"),
person("Matthias", "Scholz", role = "ctb"), person("Georg",
"Weingart", role = "ctb", comment = "development of GC-MS
approach"), person("Elisabete", "Carvalho", role = "ctb",
comment = "testing and feedback of GC-MS pipeline"))
Depends: R (>= 2.10), methods, CAMERA, xcms (>= 1.35)
Imports: Matrix, tools, robustbase, BiocGenerics
Suggests: metaMSdata, RUnit
Description: MS-based metabolomics data processing and compound
annotation pipeline.
License: GPL (>= 2)
biocViews: MassSpectrometry, Metabolomics
Author: Ron Wehrens [aut, cre] (author of GC-MS part), Pietro
Franceschi [aut] (author of LC-MS part), Nir Shahaf [ctb],
Matthias Scholz [ctb], Georg Weingart [ctb] (development of
GC-MS approach), Elisabete Carvalho [ctb] (testing and feedback
of GC-MS pipeline)
Maintainer: Ron Wehrens <ron.wehrens@gmail.com>
NeedsCompilation: no
Packaged: 2016-05-04 05:24:17 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'metaMS' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'metaMS'
    finding HTML links ... done
    AnnotateTable                           html  
    FEMsettings                             html  
    finding level-2 HTML links ... done

    GCresults                               html  
    LCDBtest                                html  
    LCresults                               html  
    addRI                                   html  
    alignmentLC                             html  
    annotations2tab                         html  
    constructExpPseudoSpectra               html  
    createSTDdbGC                           html  
    createSTDdbLC                           html  
    errf                                    html  
    exptable                                html  
    getAnnotationLC                         html  
    getAnnotationMat                        html  
    getFeatureInfo                          html  
    getPeakTable                            html  
    match2ExtDB                             html  
    matchExpSpec                            html  
    matchSamples2DB                         html  
    matchSamples2Samples                    html  
    metaMS-package                          html  
    metaMSsettings-class                    html  
    metaSetting-methods                     html  
    msp                                     html  
    peakDetection                           html  
    plotPseudoSpectrum                      html  
    printString                             html  
    processStandards                        html  
    readStdInfo                             html  
    removeDoubleMasses                      html  
    runCAMERA                               html  
    runGC                                   html  
    runLC                                   html  
    threeStdsDB                             html  
    treat.DB                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (metaMS)
Making 'packages.html' ... done