metricTester

Package: metricTester
Title: Test Metric and Null Model Statistical Performance
Description: Explore the behavior and performance of phylogenetic metrics and
null models.
Version: 1.2.2
Date: 2016-6-24
Author: Eliot Miller, Chris Trisos & Damien Farine
Maintainer: Eliot Miller <eliot.isaac@gmail.com>
URL: https://github.com/eliotmiller/metricTester
BugReports: https://github.com/eliotmiller/metricTester/issues
Depends: R (>= 3.1.1), ape
Imports: methods, geiger, spacodiR, dplyr, picante, foreach,
doParallel, colorRamps, MASS
Suggests: testthat
License: GPL-3
LazyData: true
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-06-25 02:39:11 UTC; eliotmiller
Repository: CRAN
Date/Publication: 2016-06-25 19:07:45

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'metricTester' ...
** package 'metricTester' successfully unpacked and MD5 sums checked
** R
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'metricTester'
    finding HTML links ... done
    FDis                                    html  
    MRD                                     html  
    abundanceVector                         html  
    alphaMetricSims                         html  
    arenaTest                               html  
    betaErrorChecker                        html  
    betaErrorWrapper                        html  
    betaLinker                              html  
    betaMetricSims                          html  
    betaMetricsNnulls                       html  
    betaMultiLinker                         html  
    calcBetaMetrics                         html  
    calcField                               html  
    calcMetrics                             html  
    centers                                 html  
    checkBetaMetrics                        html  
    checkCDM                                html  
    checkMetrics                            html  
    checkNulls                              html  
    checkSimulations                        html  
    competitionArena                        html  
    defineBetaMetrics                       html  
    defineMetrics                           html  
    defineNulls                             html  
    defineSimulations                       html  
    dispersalNull                           html  
    distMRCA                                html  
    errorChecker                            html  
    evolveTraits                            html  
    expectations                            html  
    filteringArena                          html  
    killSome                                html  
    killSomeBig                             html  
    lengthNonZeros                          html  
    linker                                  html  
    makeCDM                                 html  
    metricPerformance                       html  
    metricsNnulls                           html  
    modifiedMPD                             html  
    multiCDM                                html  
    multiLinker                             html  
    nullPerformance                         html  
    observedBetaMetrics                     html  
    observedMetrics                         html  
    phyloField                              html  
    plotContents                            html  
    plotOverall                             html  
    plotPlacer                              html  
    plotPlotter                             html  
    plotTest                                html  
    prepData                                html  
    prepFieldData                           html  
    prepNulls                               html  
    prepSimulations                         html  
    pscCorr                                 html  
    randomArena                             html  
    readIn                                  html  
    reduceRandomizations                    html  
    reduceResults                           html  
    regionalNull                            html  
    relativeCDM                             html  
    runNulls                                html  
    runSimulations                          html  
    sesField                                html  
    sesIndiv                                html  
    sesOverall                              html  
    sesPhyloField                           html  
    sesSingle                               html  
    sesTraitField                           html  
    settleSome                              html  
    simulateComm                            html  
    summCorrs                               html  
    summaries                               html  
    synthComm                               html  
    traitField                              html  
    varyX                                   html  
** building package indices
** testing if installed package can be loaded
* DONE (metricTester)
Making 'packages.html' ... done