Last data update: 2014.03.03


Package: mgcv
Version: 1.8-12
Author: Simon Wood <>
Maintainer: Simon Wood <>
Title: Mixed GAM Computation Vehicle with GCV/AIC/REML Smoothness
Description: GAMs, GAMMs and other generalized ridge regression with
multiple smoothing parameter estimation by GCV, REML or UBRE/AIC.
Includes a gam() function, a wide variety of smoothers, JAGS
support and distributions beyond the exponential family.
Priority: recommended
Depends: R (>= 2.14.0), nlme (>= 3.1-64)
Imports: methods, stats, graphics, Matrix
Suggests: splines, parallel, survival, MASS
LazyLoad: yes
ByteCompile: yes
License: GPL (>= 2)
NeedsCompilation: yes
Packaged: 2016-03-02 18:21:25 UTC; sw283
Repository: CRAN
Date/Publication: 2016-03-03 07:57:37

● Cran Task View: Bayesian, Econometrics
● 0 images, 121 functions, 0 datasets
Reverse Depends: 39

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'mgcv' ...
** package 'mgcv' successfully unpacked and MD5 sums checked
** libs
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -fopenmp -fpic  -g -O2  -c coxph.c -o coxph.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -fopenmp -fpic  -g -O2  -c discrete.c -o discrete.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -fopenmp -fpic  -g -O2  -c gdi.c -o gdi.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -fopenmp -fpic  -g -O2  -c init.c -o init.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -fopenmp -fpic  -g -O2  -c magic.c -o magic.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -fopenmp -fpic  -g -O2  -c mat.c -o mat.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -fopenmp -fpic  -g -O2  -c matrix.c -o matrix.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -fopenmp -fpic  -g -O2  -c mgcv.c -o mgcv.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -fopenmp -fpic  -g -O2  -c misc.c -o misc.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -fopenmp -fpic  -g -O2  -c mvn.c -o mvn.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -fopenmp -fpic  -g -O2  -c qp.c -o qp.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -fopenmp -fpic  -g -O2  -c soap.c -o soap.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -fopenmp -fpic  -g -O2  -c sparse-smooth.c -o sparse-smooth.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -fopenmp -fpic  -g -O2  -c tprs.c -o tprs.o
gcc -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o coxph.o discrete.o gdi.o init.o magic.o mat.o matrix.o mgcv.o misc.o mvn.o qp.o soap.o sparse-smooth.o tprs.o -L/home/ddbj/local/lib64/R/lib -lRlapack -L/home/ddbj/local/lib64/R/lib -lRblas -lgfortran -lm -lquadmath -fopenmp -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/mgcv/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'mgcv'
    finding HTML links ... done
    Beta                                    html  
    Predict.matrix                          html                html                html  
    Rrank                                   html  
    Tweedie                                 html  
    anova.gam                               html  
    bam                                     html  
Rd warning: /tmp/RtmpNJzg3V/R.INSTALL23b24f8e2b05/mgcv/man/bam.Rd:13: missing file link 'parallel'
Rd warning: /tmp/RtmpNJzg3V/R.INSTALL23b24f8e2b05/mgcv/man/bam.Rd:136: missing file link 'parLapply'
Rd warning: /tmp/RtmpNJzg3V/R.INSTALL23b24f8e2b05/mgcv/man/bam.Rd:191: missing file link 'makeForkCluster'
    bam.update                              html  
    bandchol                                html  
    bug.reports.mgcv                        html  
    cSplineDes                              html  
    choose.k                                html  
    columb                                  html  
    concurvity                              html  
    coxph                                   html  
    exclude.too.far                         html  
    extract.lme.cov                         html  
    family.mgcv                             html                         html  
    fixDependence                           html  
    formXtViX                               html  
    formula.gam                             html  
    fs.test                                 html  
    full.score                              html  
    gam                                     html  
    gam.check                               html  
    gam.control                             html  
    gam.convergence                         html                                 html  
    gam.fit3                                html  
    gam.models                              html  
    gam.outer                               html  
    gam.scale                               html  
    gam.selection                           html  
    gam.side                                html  
    gam.vcomp                               html  
    gam2objective                           html  
    gamObject                               html  
    gamSim                                  html  
    gamm                                    html  
    gaulss                                  html  
    get.var                                 html  
    in.out                                  html  
    inSide                                  html  
    influence.gam                           html  
    initial.sp                              html  
    interpret.gam                           html  
    jagam                                   html  
    ldTweedie                               html  
    linear.functional.terms                 html  
    logLik.gam                              html  
    ls.size                                 html  
    magic                                   html                         html  
    mgcv-FAQ                                html  
    mgcv-package                            html  
    mgcv-parallel                           html  
Rd warning: /tmp/RtmpNJzg3V/R.INSTALL23b24f8e2b05/mgcv/man/mgcv-parallel.Rd:11: missing file link 'parallel'                            html  
    model.matrix.gam                        html  
    mono.con                                html  
    mroot                                   html  
    multinom                                html  
    mvn                                     html  
    negbin                                  html                                html  
    notExp                                  html  
    notExp2                                 html                    html  
    ocat                                    html  
    pcls                                    html  
    pdIdnot                                 html  
    pdTens                                  html  
    pen.edf                                 html  
    place.knots                             html  
    plot.gam                                html  
    polys.plot                              html  
    predict.bam                             html  
Rd warning: /tmp/RtmpNJzg3V/R.INSTALL23b24f8e2b05/mgcv/man/predict.bam.Rd:76: missing file link 'parLapply'
    predict.gam                             html  
    print.gam                               html  
    qq.gam                                  html  
    rTweedie                                html  
    random.effects                          html  
    residuals.gam                           html  
    rig                                     html  
    rmvn                                    html  
    s                                       html  
    scat                                    html  
    sdiag                                   html  
    single.index                            html  
    slanczos                                html  
    smooth.construct                        html         html         html         html  
    smooth.construct.ds.smooth.spec         html  
    smooth.construct.fs.smooth.spec         html         html  
    smooth.construct.mrf.smooth.spec        html         html         html         html  
    smooth.construct.sos.smooth.spec        html  
    smooth.construct.t2.smooth.spec         html  
    smooth.construct.tensor.smooth.spec     html         html  
    smooth.terms                            html  
    smoothCon                               html  
    sp.vcov                                 html  
    spasm.construct                         html  
    step.gam                                html  
    summary.gam                             html  
    t2                                      html  
    te                                      html                html  
    trichol                                 html  
    uniquecombs                             html  
    vcov.gam                                html  
    vis.gam                                 html  
    ziP                                     html  
    ziplss                                  html  
** building package indices
** testing if installed package can be loaded
* DONE (mgcv)
Making 'packages.html' ... done