Last data update: 2014.03.03
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mgcv
Package: mgcv
Version: 1.8-12
Author: Simon Wood <simon.wood@r-project.org>
Maintainer: Simon Wood <simon.wood@r-project.org>
Title: Mixed GAM Computation Vehicle with GCV/AIC/REML Smoothness
Estimation
Description: GAMs, GAMMs and other generalized ridge regression with
multiple smoothing parameter estimation by GCV, REML or UBRE/AIC.
Includes a gam() function, a wide variety of smoothers, JAGS
support and distributions beyond the exponential family.
Priority: recommended
Depends: R (>= 2.14.0), nlme (>= 3.1-64)
Imports: methods, stats, graphics, Matrix
Suggests: splines, parallel, survival, MASS
LazyLoad: yes
ByteCompile: yes
License: GPL (>= 2)
NeedsCompilation: yes
Packaged: 2016-03-02 18:21:25 UTC; sw283
Repository: CRAN
Date/Publication: 2016-03-03 07:57:37
Install log
* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'mgcv' ...
** package 'mgcv' successfully unpacked and MD5 sums checked
** libs
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c coxph.c -o coxph.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c discrete.c -o discrete.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c gdi.c -o gdi.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c init.c -o init.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c magic.c -o magic.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c mat.c -o mat.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c matrix.c -o matrix.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c mgcv.c -o mgcv.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c misc.c -o misc.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c mvn.c -o mvn.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c qp.c -o qp.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c soap.c -o soap.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c sparse-smooth.c -o sparse-smooth.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c tprs.c -o tprs.o
gcc -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o mgcv.so coxph.o discrete.o gdi.o init.o magic.o mat.o matrix.o mgcv.o misc.o mvn.o qp.o soap.o sparse-smooth.o tprs.o -L/home/ddbj/local/lib64/R/lib -lRlapack -L/home/ddbj/local/lib64/R/lib -lRblas -lgfortran -lm -lquadmath -fopenmp -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/mgcv/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'mgcv'
finding HTML links ... done
Beta html
Predict.matrix html
Predict.matrix.cr.smooth html
Predict.matrix.soap.film html
Rrank html
Tweedie html
anova.gam html
bam html
Rd warning: /tmp/RtmpNJzg3V/R.INSTALL23b24f8e2b05/mgcv/man/bam.Rd:13: missing file link 'parallel'
Rd warning: /tmp/RtmpNJzg3V/R.INSTALL23b24f8e2b05/mgcv/man/bam.Rd:136: missing file link 'parLapply'
Rd warning: /tmp/RtmpNJzg3V/R.INSTALL23b24f8e2b05/mgcv/man/bam.Rd:191: missing file link 'makeForkCluster'
bam.update html
bandchol html
bug.reports.mgcv html
cSplineDes html
choose.k html
columb html
concurvity html
coxph html
exclude.too.far html
extract.lme.cov html
family.mgcv html
fix.family.link html
fixDependence html
formXtViX html
formula.gam html
fs.test html
full.score html
gam html
gam.check html
gam.control html
gam.convergence html
gam.fit html
gam.fit3 html
gam.models html
gam.outer html
gam.scale html
gam.selection html
gam.side html
gam.vcomp html
gam2objective html
gamObject html
gamSim html
gamm html
gaulss html
get.var html
in.out html
inSide html
influence.gam html
initial.sp html
interpret.gam html
jagam html
ldTweedie html
linear.functional.terms html
logLik.gam html
ls.size html
magic html
magic.post.proc html
mgcv-FAQ html
mgcv-package html
mgcv-parallel html
Rd warning: /tmp/RtmpNJzg3V/R.INSTALL23b24f8e2b05/mgcv/man/mgcv-parallel.Rd:11: missing file link 'parallel'
missing.data html
model.matrix.gam html
mono.con html
mroot html
multinom html
mvn html
negbin html
new.name html
notExp html
notExp2 html
null.space.dimension html
ocat html
pcls html
pdIdnot html
pdTens html
pen.edf html
place.knots html
plot.gam html
polys.plot html
predict.bam html
Rd warning: /tmp/RtmpNJzg3V/R.INSTALL23b24f8e2b05/mgcv/man/predict.bam.Rd:76: missing file link 'parLapply'
predict.gam html
print.gam html
qq.gam html
rTweedie html
random.effects html
residuals.gam html
rig html
rmvn html
s html
scat html
sdiag html
single.index html
slanczos html
smooth.construct html
smooth.construct.ad.smooth.spec html
smooth.construct.bs.smooth.spec html
smooth.construct.cr.smooth.spec html
smooth.construct.ds.smooth.spec html
smooth.construct.fs.smooth.spec html
smooth.construct.gp.smooth.spec html
smooth.construct.mrf.smooth.spec html
smooth.construct.ps.smooth.spec html
smooth.construct.re.smooth.spec html
smooth.construct.so.smooth.spec html
smooth.construct.sos.smooth.spec html
smooth.construct.t2.smooth.spec html
smooth.construct.tensor.smooth.spec html
smooth.construct.tp.smooth.spec html
smooth.terms html
smoothCon html
sp.vcov html
spasm.construct html
step.gam html
summary.gam html
t2 html
te html
tensor.prod.model.matrix html
trichol html
uniquecombs html
vcov.gam html
vis.gam html
ziP html
ziplss html
** building package indices
** testing if installed package can be loaded
* DONE (mgcv)
Making 'packages.html' ... done
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