mgsa

Package: mgsa
Version: 1.20.0
Date: 2016-03-30
Title: Model-based gene set analysis
Author: Sebastian Bauer <mail@sebastianbauer.info>, Julien Gagneur
<gagneur@genzentrum.lmu.de>
Maintainer: Sebastian Bauer <mail@sebastianbauer.info>
Depends: R (>= 2.14.0), methods, gplots
Imports: graphics, stats, utils
Suggests: DBI, RSQLite, GO.db, testthat
Description: Model-based Gene Set Analysis (MGSA) is a Bayesian
modeling approach for gene set enrichment. The package mgsa
implements MGSA and tools to use MGSA together with the Gene
Ontology.
License: Artistic-2.0
URL: https://github.com/sba1/mgsa-bioc
biocViews: Pathways, GO, GeneSetEnrichment
LazyLoad: yes
Collate: 'dottedTable.R' 'MgsaSets-class.R' 'MgsaGoSets-class.R'
'MgsaResults-class.R' 'mgsa-methods.R' 'mgsa-package.R' 'zzz.R'
NeedsCompilation: yes
Packaged: 2016-05-04 03:53:41 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'mgsa' ...
configure: creating ./config.status
config.status: creating src/Makevars
** libs
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -I. -fopenmp -fpic  -g -O2  -c mgsa.c -o mgsa.o
gcc -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o mgsa.so mgsa.o -fopenmp -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/mgsa/libs
** R
** data
** inst
** preparing package for lazy loading
Creating a generic function for 'plot' from package 'graphics' in package 'mgsa'
** help
*** installing help indices
  converting help for package 'mgsa'
    finding HTML links ... done
    MgsaGoSets-class                        html  
    MgsaMcmcResults-class                   html  
    MgsaResults-class                       html  
    MgsaSets-class                          html  
    alphaMcmcPost-methods                   html  
    alphaPost-methods                       html  
    betaMcmcPost-methods                    html  
    betaPost-methods                        html  
    createMgsaGoSets                        html  
    example-go                              html  
    example-o                               html  
    itemAnnotations-methods                 html  
    itemIndices-methods                     html  
    length-methods                          html  
    mgsa-methods                            html  
    mgsa-package                            html  
    nsamples-methods                        html  
    pMcmcPost-methods                       html  
    pPost-methods                           html  
    plot-MgsaResults-method                 html  
    populationSize-methods                  html  
    readGAF                                 html  
    restarts-methods                        html  
    setAnnotations-methods                  html  
    setsMcmcPost-methods                    html  
    setsResults-methods                     html  
    show-MgsaResults-method                 html  
    show-MgsaSets-method                    html  
    steps-methods                           html  
    studySetSizeInPopulation-methods        html  
    subMgsaSets-methods                     html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (mgsa)
Making 'packages.html' ... done