Last data update: 2014.03.03
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miRNApath
Package: miRNApath
Type: Package
Title: miRNApath: Pathway Enrichment for miRNA Expression Data
Version: 1.32.0
Author: James M. Ward <jmw86069@gmail.com> with contributions
from Yunling Shi, Cindy Richards, John P. Cogswell
Maintainer: James M. Ward <jmw86069@gmail.com>
Description: This package provides pathway enrichment techniques
for miRNA expression data. Specifically, the set of
methods handles the many-to-many relationship between miRNAs
and the multiple genes they are predicted to target (and thus
affect.) It also handles the gene-to-pathway relationships
separately. Both steps are designed to preserve the additive
effects of miRNAs on genes, many miRNAs affecting one gene,
one miRNA affecting multiple genes, or many miRNAs affecting
many genes.
License: LGPL-2.1
biocViews: Annotation, Pathways, DifferentialExpression,
NetworkEnrichment, miRNA
Depends: methods, R (>= 2.7.0)
LazyLoad: Yes
NeedsCompilation: no
Packaged: 2016-05-04 03:09:04 UTC; biocbuild
Install log
* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'miRNApath' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
converting help for package 'miRNApath'
finding HTML links ... done
checkColumns html
convertFoldChange html
filtermirnapath html
loadmirnapath html
loadmirnapathways html
loadmirnatogene html
miRNApath-package html
mirnaTable html
mirnaobj html
mirnapath-class html
runEnrichment html
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (miRNApath)
Making 'packages.html' ... done
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