mice

Package: mice
Type: Package
Version: 2.25
Title: Multivariate Imputation by Chained Equations
Date: 2015-11-09
Authors@R: c(person("Stef", "van Buuren", role = c("aut","cre"),
email = "stef.vanbuuren@tno.nl"),
person("Karin", "Groothuis-Oudshoorn", role = "aut",
email = "c.g.m.oudshoorn@utwente.nl"),
person("Alexander", "Robitzsch", role = "ctb",
email = "a.robitzsch@bifie.at"),
person("Gerko","Vink", role = "ctb",
email = "g.vink@uu.nl"),
person("Lisa","Doove", role = "ctb",
email = "lisa.doove@ppw.kuleuven.be"),
person("Shahab","Jolani", role = "ctb",
email = "s.jolani@uu.nl"))
Maintainer: Stef van Buuren <stef.vanbuuren@tno.nl>
Depends: methods, R (>= 2.10.0), Rcpp (>= 0.10.6)
Imports: lattice, grDevices, graphics, MASS, nnet, rpart, splines,
stats, survival, utils
Suggests: AGD, CALIBERrfimpute, gamlss, lme4, mitools, nlme, pan,
randomForest, Zelig
LinkingTo: Rcpp
Description: Multiple imputation using Fully Conditional Specification (FCS)
implemented by the MICE algorithm. Each variable has its own imputation
model. Built-in imputation models are provided for continuous data
(predictive mean matching, normal), binary data (logistic regression),
unordered categorical data (polytomous logistic regression) and ordered
categorical data (proportional odds). MICE can also impute continuous
two-level data (normal model, pan, second-level variables). Passive
imputation can be used to maintain consistency between variables. Various
diagnostic plots are available to inspect the quality of the imputations.
License: GPL-2 | GPL-3
LazyLoad: yes
LazyData: yes
URL: http://www.stefvanbuuren.nl
NeedsCompilation: yes
Packaged: 2015-11-09 14:33:15 UTC; buurensv
Author: Stef van Buuren [aut, cre],
Karin Groothuis-Oudshoorn [aut],
Alexander Robitzsch [ctb],
Gerko Vink [ctb],
Lisa Doove [ctb],
Shahab Jolani [ctb]
Repository: CRAN
Date/Publication: 2015-11-09 17:16:02

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'mice' ...
** package 'mice' successfully unpacked and MD5 sums checked
** libs
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c RcppExports.cpp -o RcppExports.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c match.cpp -o match.o
match.cpp: In function 'Rcpp::IntegerVector matcher(Rcpp::NumericVector, Rcpp::NumericVector, int)':
match.cpp:47:48: warning: name lookup of 'k' changed
       std::nth_element (d2.begin(), d2.begin()+k-1, d2.end());
                                                ^
match.cpp:7:65: warning:   matches this 'k' under ISO standard rules
 IntegerVector matcher(NumericVector obs, NumericVector mis, int k) {
                                                                 ^
match.cpp:43:16: warning:   matches this 'k' under old rules
       for (int k = 0; k < n1; k++) d[k] = std::abs(obs[k] - dk) + d2[k];
                ^
match.cpp:53:12: warning: name lookup of 'j' changed
       for (j = 0; j < n1; j++) {
            ^
match.cpp:18:7: warning:   matches this 'j' under ISO standard rules
   int j;
       ^
match.cpp:46:16: warning:   matches this 'j' under old rules
       for (int j = 0; j < n1; j++) d2[j] = d[j];
                ^
g++ -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o mice.so RcppExports.o match.o -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/mice/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
in method for 'cci' with signature 'x="mids"': no definition for class "mids"
in method for 'ici' with signature 'x="mids"': no definition for class "mids"
** help
*** installing help indices
  converting help for package 'mice'
    finding HTML links ... done
    appendbreak                             html  
    as.mids                                 html  
    as.mira                                 html  
    boys                                    html  
    bwplot.mids                             html  
Rd warning: /tmp/RtmpRhnJS4/R.INSTALL65756ae945bb/mice/man/bwplot.mids.Rd:171: missing file link 'bwplot'
Rd warning: /tmp/RtmpRhnJS4/R.INSTALL65756ae945bb/mice/man/bwplot.mids.Rd:174: missing file link 'trellis.par.set'
    cbind.mids                              html  
    cc-methods                              html  
    cci-methods                             html  
    ccn-methods                             html  
    complete                                html  
    densityplot.mids                        html  
Rd warning: /tmp/RtmpRhnJS4/R.INSTALL65756ae945bb/mice/man/densityplot.mids.Rd:189: missing file link 'densityplot'
Rd warning: /tmp/RtmpRhnJS4/R.INSTALL65756ae945bb/mice/man/densityplot.mids.Rd:192: missing file link 'trellis.par.set'
    extractBS                               html  
    fdd                                     html  
    fdgs                                    html  
    fico                                    html  
    flux                                    html  
    fluxplot                                html  
    getfit                                  html  
    glm.mids                                html  
    ibind                                   html  
    ic-methods                              html  
    ici-methods                             html  
    icn-methods                             html  
    ifdo                                    html  
    is.mids                                 html  
    is.mipo                                 html  
    is.mira                                 html  
    leiden85                                html  
    lm.mids                                 html  
    long2mids                               html  
    mammalsleep                             html  
    md.pairs                                html  
    md.pattern                              html  
    mdc                                     html  
Rd warning: /tmp/RtmpRhnJS4/R.INSTALL65756ae945bb/mice/man/mdc.Rd:75: missing file link 'xyplot'
Rd warning: /tmp/RtmpRhnJS4/R.INSTALL65756ae945bb/mice/man/mdc.Rd:76: missing file link 'trellis.par.set'
    mice                                    html  
    mice.impute.2l.norm                     html  
    mice.impute.2l.pan                      html  
    mice.impute.2lonly.mean                 html  
    mice.impute.2lonly.norm                 html  
    mice.impute.2lonly.pmm                  html  
    mice.impute.cart                        html  
    mice.impute.fastpmm                     html  
    mice.impute.lda                         html  
    mice.impute.logreg                      html  
    mice.impute.logreg.boot                 html  
    mice.impute.mean                        html  
    mice.impute.norm                        html  
    mice.impute.norm.boot                   html  
    mice.impute.norm.nob                    html  
    mice.impute.norm.predict                html  
    mice.impute.passive                     html  
    mice.impute.pmm                         html  
    mice.impute.polr                        html  
    mice.impute.polyreg                     html  
    mice.impute.quadratic                   html  
    mice.impute.rf                          html  
    mice.impute.ri                          html  
    mice.impute.sample                      html  
    mice.mids                               html  
    mice.theme                              html  
    mids-class                              html  
    mids2mplus                              html  
    mids2spss                               html  
    mipo-class                              html  
    mira-class                              html  
    nelsonaalen                             html  
    nhanes                                  html  
    nhanes2                                 html  
    norm.draw                               html  
    pattern                                 html  
    plot.mids                               html  
    pool                                    html  
    pool.compare                            html  
    pool.r.squared                          html  
    pool.scalar                             html  
    popmis                                  html  
    pops                                    html  
    potthoffroy                             html  
    print                                   html  
    quickpred                               html  
    rbind.mids                              html  
    selfreport                              html  
    squeeze                                 html  
    stripplot.mids                          html  
Rd warning: /tmp/RtmpRhnJS4/R.INSTALL65756ae945bb/mice/man/stripplot.mids.Rd:197: missing file link 'stripplot'
Rd warning: /tmp/RtmpRhnJS4/R.INSTALL65756ae945bb/mice/man/stripplot.mids.Rd:200: missing file link 'trellis.par.set'
    summary                                 html  
    supports.transparent                    html  
    tbc                                     html  
    version                                 html  
    walking                                 html  
    windspeed                               html  
    with.mids                               html  
    xyplot.mids                             html  
Rd warning: /tmp/RtmpRhnJS4/R.INSTALL65756ae945bb/mice/man/xyplot.mids.Rd:162: missing file link 'trellis.par.set'
** building package indices
** testing if installed package can be loaded
* DONE (mice)
Making 'packages.html' ... done