miceadds

Package: miceadds
Type: Package
Title: Some Additional Multiple Imputation Functions, Especially for
'mice'
Version: 1.8-0
Date: 2016-05-31
Author:
Alexander Robitzsch [aut, cre], Simon Grund [aut],
Thorsten Henke [aut]
Maintainer:
Alexander Robitzsch <robitzsch@ipn.uni-kiel.de>
Description:
Contains some auxiliary functions for multiple
imputation which complements existing functionality
in R.
In addition to some utility functions, main features
include plausible value imputation, multilevel
imputation functions, imputation using partial least
squares (PLS) for high dimensional predictors, nested
multiple imputation, and two-way imputation.
Depends: R (>= 2.15.0), mice
Imports: car, foreign, graphics, grouped, lme4, MASS, MCMCglmm,
methods, mitools, multiwayvcov, mvtnorm, Rcpp, sirt, sjmisc,
stats, TAM (>= 1.99), utils
LinkingTo: Rcpp, RcppArmadillo
Suggests: Amelia, BIFIEsurvey, haven, Hmisc, inline, jomo, MBESS,
mitml, pan, pls, Zelig
License: GPL (>= 2)
NeedsCompilation: yes
Packaged: 2016-05-31 18:46:25 UTC; sunpn563
Repository: CRAN
Date/Publication: 2016-05-31 23:15:35

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'miceadds' ...
** package 'miceadds' successfully unpacked and MD5 sums checked
** libs
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include"   -fpic  -g -O2  -c create_interactions_c.cpp -o create_interactions_c.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include"   -fpic  -g -O2  -c kernelpls_1dim_c.cpp -o kernelpls_1dim_c.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include"   -fpic  -g -O2  -c ma_pmm6_csource.cpp -o ma_pmm6_csource.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include"   -fpic  -g -O2  -c ma_scale.cpp -o ma_scale.o
g++ -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o miceadds.so create_interactions_c.o kernelpls_1dim_c.o ma_pmm6_csource.o ma_scale.o -L/home/ddbj/local/lib64/R/lib -lRlapack -L/home/ddbj/local/lib64/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/miceadds/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'miceadds'
    finding HTML links ... done
    GroupMean                               html  
    NMIwaldtest                             html  
    NestedImputationList                    html  
    Reval                                   html  
    Rhat.mice                               html  
    Rsessinfo                               html  
    VariableNames2String                    html  
    complete.miceadds                       html  
    crlrem                                  html  
    cxxfunction.copy                        html  
    data.allison                            html  
    data.enders                             html  
    data.graham                             html  
    data.internet                           html  
    data.largescale                         html  
    data.ma                                 html  
    data.smallscale                         html  
    datalist2mids                           html  
Rd warning: /tmp/RtmpR5rVmG/R.INSTALL34467911e72b/miceadds/man/datalist2mids.Rd:10: missing file link 'mids'
    datlist_create                          html  
    draw.pv.ctt                             html  
    grep.vec                                html  
    index.dataframe                         html  
    jomo2datlist                            html  
    kernelpls.fit2                          html  
    library_install                         html  
    lm.cluster                              html  
    load.Rdata                              html  
    load.data                               html  
Rd warning: /tmp/RtmpR5rVmG/R.INSTALL34467911e72b/miceadds/man/load.data.Rd:29: missing file link 'read.csv2'
Rd warning: /tmp/RtmpR5rVmG/R.INSTALL34467911e72b/miceadds/man/load.data.Rd:30: missing file link 'read.csv'
    ma.scale2                               html  
    ma.wtd.statNA                           html  
Rd warning: /tmp/RtmpR5rVmG/R.INSTALL34467911e72b/miceadds/man/ma.wtd.statNA.Rd:59: missing file link 'weighted_quantile'
Rd warning: /tmp/RtmpR5rVmG/R.INSTALL34467911e72b/miceadds/man/ma.wtd.statNA.Rd:98: missing file link 'wtd.var'
Rd warning: /tmp/RtmpR5rVmG/R.INSTALL34467911e72b/miceadds/man/ma.wtd.statNA.Rd:99: missing file link 'weighted_quantile'
    mi.anova                                html  
    mi_dstat                                html  
    mice.1chain                             html  
    mice.impute.2l.binary                   html  
    mice.impute.2l.contextual.norm          html  
    mice.impute.2l.contextual.pmm           html  
    mice.impute.2l.eap                      html  
    mice.impute.2l.latentgroupmean.ML       html  
    mice.impute.2l.plausible.values         html  
    mice.impute.2l.pls                      html  
Rd warning: /tmp/RtmpR5rVmG/R.INSTALL34467911e72b/miceadds/man/mice.impute.2l.pls.Rd:76: missing file link 'plsr'
    mice.impute.2lonly.pmm2                 html  
    mice.impute.grouped                     html  
    mice.impute.pmm3                        html  
    mice.impute.tricube.pmm                 html  
    mice.impute.weighted.norm               html  
    mice.impute.weighted.pmm                html  
    mice.nmi                                html  
    miceadds-package                        html  
    micombine.F                             html  
    micombine.chisquare                     html  
    micombine.cor                           html  
    mids2datlist                            html  
    mids2mlwin                              html  
    nestedList2List                         html  
    output.format1                          html  
    pca.covridge                            html  
    pool.mids.nmi                           html  
    pool_mi                                 html  
    round2                                  html  
    save.Rdata                              html  
    save.data                               html  
Rd warning: /tmp/RtmpR5rVmG/R.INSTALL34467911e72b/miceadds/man/save.data.Rd:31: missing file link 'write.csv2'
Rd warning: /tmp/RtmpR5rVmG/R.INSTALL34467911e72b/miceadds/man/save.data.Rd:32: missing file link 'write.csv'
    scale_datlist                           html  
    scan.vector                             html  
    source.all                              html  
    str_C.expand.grid                       html  
    subset_datlist                          html  
    sumpreserving.rounding                  html  
    systime                                 html  
    tw.imputation                           html  
    visitSequence.determine                 html  
    with.miceadds                           html  
Rd warning: /tmp/RtmpR5rVmG/R.INSTALL34467911e72b/miceadds/man/with.miceadds.Rd:26: missing file link 'within.data.frame'
Rd warning: /tmp/RtmpR5rVmG/R.INSTALL34467911e72b/miceadds/man/with.miceadds.Rd:101: missing file link 'summary.mira'
Rd warning: /tmp/RtmpR5rVmG/R.INSTALL34467911e72b/miceadds/man/with.miceadds.Rd:102: missing file link 'within.data.frame'
Rd warning: /tmp/RtmpR5rVmG/R.INSTALL34467911e72b/miceadds/man/with.miceadds.Rd:115: missing file link 'with.mitml.list'
Rd warning: /tmp/RtmpR5rVmG/R.INSTALL34467911e72b/miceadds/man/with.miceadds.Rd:118: missing file link 'within.data.frame'
Rd warning: /tmp/RtmpR5rVmG/R.INSTALL34467911e72b/miceadds/man/with.miceadds.Rd:119: missing file link 'within.mitml.list'
Rd warning: /tmp/RtmpR5rVmG/R.INSTALL34467911e72b/miceadds/man/with.miceadds.Rd:121: missing file link 'summary.mira'
    write.datlist                           html  
    write.fwf2                              html  
    write.mice.imputation                   html  
    write.pspp                              html  
Rd warning: /tmp/RtmpR5rVmG/R.INSTALL34467911e72b/miceadds/man/write.pspp.Rd:68: missing file link 'write_sav'
** building package indices
** testing if installed package can be loaded
* DONE (miceadds)
Making 'packages.html' ... done