micropan

Package: micropan
Type: Package
Title: Microbial Pan-genome Analysis
Version: 1.0
Date: 2014-09-03
Author: Lars Snipen and Kristian Hovde Liland
Maintainer: Lars Snipen <lars.snipen@nmbu.no>
Description: A collection of functions for computations and visualizations of microbial pan-genomes.
Depends: R (>= 2.15.0), igraph
License: GPL-2
LazyData: FALSE
ZipData: TRUE
Packaged: 2014-09-09 09:30:39 UTC; larssn
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-09 14:18:33

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'micropan' ...
** package 'micropan' successfully unpacked and MD5 sums checked
** R
** data
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'micropan'
    finding HTML links ... done
    bClust                                  html  
    finding level-2 HTML links ... done

    bDist                                   html  
    binomixEstimate                         html  
    binomixMachine                          html  
    blastAllAll                             html  
    chao                                    html  
    dClust                                  html  
    distJaccard                             html  
    distManhattan                           html  
    entrezDownload                          html  
    fluidity                                html  
    geneWeights                             html  
    getAccessions                           html  
    gregexpr                                html  
Rd warning: /tmp/Rtmp1LO4xI/R.INSTALL7fd13496c5b2/micropan/man/gregexpr.Rd:35: missing file link 'gregexpr'
    heaps                                   html  
    hmmerCleanOverlap                       html  
    hmmerScan                               html  
    isOrtholog                              html  
    micropan-package                        html  
    mpneumoniae                             html  
    negTruncLogLike                         html  
    panMatrix                               html  
    panPrep                                 html  
    panTree                                 html  
    panpca                                  html  
    plot.Binomix                            html  
    plot.Fasta                              html  
    plot.Panmat                             html  
    plot.Panpca                             html  
    plot.Pantree                            html  
    plot.Rarefac                            html  
    plotScores                              html  
    prodigalPredict                         html  
    rarefaction                             html  
    readBlastTable                          html  
    readFasta                               html  
    readHmmer                               html  
    reverseComplement                       html  
    setLeafAttributes                       html  
    translate                               html  
    xz                                      html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (micropan)
Making 'packages.html' ... done