mlgt

Package: mlgt
Type: Package
Title: Multi-Locus Geno-Typing
Version: 0.16
Date: 2012-03-26
Author: Dave T. Gerrard
Maintainer: Dave T. Gerrard <david.gerrard@manchester.ac.uk>
Description: Processing and analysis of high throughput (Roche 454)
sequences generated from multiple loci and multiple biological
samples. Sequences are assigned to their locus and sample of
origin, aligned and trimmed. Where possible, genotypes are
called and variants mapped to known alleles.
License: GPL (>= 2)
LazyLoad: yes
Depends: R (>= 2.13.0), methods, seqinr
Suggests: snowfall
URL: http://personalpages.manchester.ac.uk/staff/David.Gerrard/
Collate: 'mlgt.R'
Packaged: 2012-03-26 12:17:22 UTC; Dave
Repository: CRAN
Date/Publication: 2012-03-26 13:20:25

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'mlgt' ...
** package 'mlgt' successfully unpacked and MD5 sums checked
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'mlgt'
    finding HTML links ... done
    alignReport                             html  
    callGenotypes                           html  
    callGenotypes.default                   html  
    combineMlgtResults                      html  
    createKnownAlleleList                   html  
    dumpVariantMap.mlgtResult               html  
    dumpVariants                            html  
    errorCorrect-methods                    html  
    genotypeCall                            html  
    getSubSeqsTable                         html  
    getTopBlastHits                         html  
    inspectBlastResults                     html  
    mlgt-methods                            html  
    mlgt-package                            html  
    mlgtDesign                              html  
    mlgtResult                              html  
    my.mlgt.Result                          html  
    plotGenotypeEvidence-methods            html  
    prepareMlgtRun-methods                  html  
    printBlastResultGraphs                  html  
    variantMap                              html  
    writeGenotypeCallsToFile-methods        html  
** building package indices
** testing if installed package can be loaded
* DONE (mlgt)
Making 'packages.html' ... done