motifRG

Package: motifRG
Title: A package for discriminative motif discovery, designed for high
throughput sequencing dataset
Version: 1.16.0
Date: 2012-03-23
Author: Zizhen Yao
Description: Tools for discriminative motif discovery using regression methods
Imports:
Biostrings,IRanges,seqLogo,parallel,methods,grid,graphics,XVector
Maintainer: Zizhen Yao <yzizhen@fhcrc.org>
License: Artistic-2.0
LazyLoad: yes
biocViews: Transcription,MotifDiscovery
Packaged: 2016-05-04 04:36:10 UTC; biocbuild
Depends: R (>= 2.15), Biostrings (>= 2.26), IRanges, seqLogo, parallel,
methods, grid, graphics, BSgenome, XVector,
BSgenome.Hsapiens.UCSC.hg19
NeedsCompilation: no

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'motifRG' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'motifRG'
    finding HTML links ... done
    Motif                                   html  
    YY1.control                             html  
    YY1.peak                                html  
    ctcf.motifs                             html  
    findMotif                               html  
    findMotifFasta                          html  
    findMotifFgBg                           html  
    getSequence                             html  
    motifLatexTable                         html  
    plotMotif                               html  
    finding level-2 HTML links ... done

    refinePWMMotif                          html  
    refinePWMMotifExtend                    html  
    summaryMotif                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (motifRG)
Making 'packages.html' ... done