msm

Package: msm
Version: 1.6.1
Date: 2016-03-09
Title: Multi-State Markov and Hidden Markov Models in Continuous Time
Author: Christopher Jackson <chris.jackson@mrc-bsu.cam.ac.uk>
Maintainer: Christopher Jackson <chris.jackson@mrc-bsu.cam.ac.uk>
Description: Functions for fitting continuous-time Markov and hidden
Markov multi-state models to longitudinal data. Designed for
processes observed at arbitrary times in continuous time (panel data)
but some other observation schemes are supported. Both Markov
transition rates and the hidden Markov output process can be modelled
in terms of covariates, which may be constant or piecewise-constant
in time.
License: GPL (>= 2)
Imports: survival, mvtnorm, expm
Suggests: mstate, minqa, doParallel, foreach, numDeriv, testthat, flexsurv
LazyData: yes
NeedsCompilation: yes
Packaged: 2016-03-09 11:24:28 UTC; chris
Repository: CRAN
Date/Publication: 2016-03-09 15:20:54

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'msm' ...
** package 'msm' successfully unpacked and MD5 sums checked
** libs
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c analyticp.c -o analyticp.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c hmm.c -o hmm.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c hmmderiv.c -o hmmderiv.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c lik.c -o lik.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c pijt.c -o pijt.o
gcc -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o msm.so analyticp.o hmm.o hmmderiv.o lik.o pijt.o -L/home/ddbj/local/lib64/R/lib -lRlapack -L/home/ddbj/local/lib64/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/msm/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'msm'
    finding HTML links ... done
    2phase                                  html  
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** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (msm)
Making 'packages.html' ... done