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Last data update: 2014.03.03

mvabund

Package: mvabund
Title: Statistical Methods for Analysing Multivariate Abundance Data
Version: 3.11.9
Date: 2016-04-29
Author: Yi Wang, Ulrike Naumann, Stephen Wright, Dirk Eddelbuettel and David Warton
Maintainer: David Warton <David.Warton@unsw.edu.au>
Description: A set of tools for displaying, modeling and analysing
multivariate abundance data in community ecology. See
'mvabund-package.Rd' for details of overall package organization.
The package is implemented with the Gnu Scientific Library
(http://www.gnu.org/software/gsl/) and Rcpp
(http://dirk.eddelbuettel.com/code/rcpp.html) R / C++ classes.
Depends: R (>= 3.0.0)
Imports: Rcpp, MASS, methods, stats, tweedie, statmod, parallel
LinkingTo: Rcpp, RcppGSL
License: LGPL (>= 2.1)
NeedsCompilation: yes
Packaged: 2016-04-29 05:07:43 UTC; z3103495
Repository: CRAN
Date/Publication: 2016-04-29 12:11:50

● 0 images, 36 functions, 5 datasets
● Reverse Depends: 1

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'mvabund' ...
** package 'mvabund' successfully unpacked and MD5 sums checked
** libs
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -I../inst/include `/home/ddbj/local/lib64/R/bin/Rscript -e "RcppGSL:::CFlags()"` -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppGSL/include"   -fpic  -g -O2  -c RcppExports.cpp -o RcppExports.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -I../inst/include `/home/ddbj/local/lib64/R/bin/Rscript -e "RcppGSL:::CFlags()"` -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppGSL/include"   -fpic  -g -O2  -c Rinterface.cpp -o Rinterface.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -I../inst/include `/home/ddbj/local/lib64/R/bin/Rscript -e "RcppGSL:::CFlags()"` -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppGSL/include"   -fpic  -g -O2  -c anova.cpp -o anova.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -I../inst/include `/home/ddbj/local/lib64/R/bin/Rscript -e "RcppGSL:::CFlags()"` -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppGSL/include"   -fpic  -g -O2  -c calctest.cpp -o calctest.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -I../inst/include `/home/ddbj/local/lib64/R/bin/Rscript -e "RcppGSL:::CFlags()"` -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppGSL/include"   -fpic  -g -O2  -c glm.cpp -o glm.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -I../inst/include `/home/ddbj/local/lib64/R/bin/Rscript -e "RcppGSL:::CFlags()"` -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppGSL/include"   -fpic  -g -O2  -c glmtest.cpp -o glmtest.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -I../inst/include `/home/ddbj/local/lib64/R/bin/Rscript -e "RcppGSL:::CFlags()"` -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppGSL/include"   -fpic  -g -O2  -c io.cpp -o io.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -I../inst/include `/home/ddbj/local/lib64/R/bin/Rscript -e "RcppGSL:::CFlags()"` -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppGSL/include"   -fpic  -g -O2  -c rnd.cpp -o rnd.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -I../inst/include `/home/ddbj/local/lib64/R/bin/Rscript -e "RcppGSL:::CFlags()"` -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppGSL/include"   -fpic  -g -O2  -c simutility.cpp -o simutility.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -I../inst/include `/home/ddbj/local/lib64/R/bin/Rscript -e "RcppGSL:::CFlags()"` -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppGSL/include"   -fpic  -g -O2  -c summary.cpp -o summary.o
g++ -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o mvabund.so RcppExports.o Rinterface.o anova.o calctest.o glm.o glmtest.o io.o rnd.o simutility.o summary.o -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/mvabund/libs
** R
** data
** preparing package for lazy loading
Creating a generic function for 'plot' from package 'graphics' in package 'mvabund'
** help
*** installing help indices
  converting help for package 'mvabund'
    finding HTML links ... done
    Tasmania                                html  
    anova.manyany                           html  
    anova.manyglm                           html  
    anova.manylm                            html  
    anova.traitglm                          html  
    antTraits                               html  
    best.r.sq                               html  
    boxplot.mvabund                         html  
    cv.glm1path                             html  
    deviance.manylm                         html  
    extend.x.formula                        html  
    formulaUnimva                           html  
    glm1                                    html  
    glm1path                                html  
    logLik.manylm                           html  
    manyany                                 html  
Rd warning: /tmp/Rtmp2uQA2D/R.INSTALL7d525e522bcd/mvabund/man/manyany.Rd:107: missing file link 'residuals.manyany'
    manyglm                                 html  
Rd warning: /tmp/Rtmp2uQA2D/R.INSTALL7d525e522bcd/mvabund/man/manyglm.Rd:226: missing file link 'plot.manyglm'
    manylm                                  html  
    manylm.fit                              html  
    meanvar.plot                            html  
    mvabund-internal                        html  
    mvabund-package                         html  
    mvabund                                 html  
    mvformula                               html  
    plot.manyany                            html  
    plot.manylm                             html  
    plot.mvabund                            html  
    plotMvaFactor                           html  
    predict.manyglm                         html  
    predict.manylm                          html  
    predict.traitglm                        html  
    residuals.manyglm                       html  
Rd warning: /tmp/Rtmp2uQA2D/R.INSTALL7d525e522bcd/mvabund/man/residuals.manyglm.Rd:39: missing file link 'plot.manyglm'
    ridgeParamEst                           html  
    shiftpoints                             html  
    solberg                                 html  
    spider                                  html  
    summary.manyglm                         html  
    summary.manylm                          html  
    tikus                                   html  
    traitglm                                html  
    unabund                                 html  
** building package indices
** testing if installed package can be loaded
* DONE (mvabund)
Making 'packages.html' ... done