mvcluster

Package: mvcluster
Type: Package
Title: Multi-View Clustering
Version: 1.0
Date: 2016-04-01
Author: Jiangwen Sun, Jin Lu, Tingyang Xu, Joseph Muller, Jinbo Bi
Maintainer: Jiangwen Sun <javon@engr.uconn.edu>
Description: Implementation of multi-view bi-clustering algorithms. When a sample is characterized by two or more sets of input features, it creates multiple data matrices for the same set of examples, each corresponding to a view. For instance, individuals who are diagnosed with a disorder can be described by their clinical symptoms (one view) and their genomic markers (another view). Rows of a data matrix correspond to examples and columns correspond to features. A multi-view bi-clustering algorithm groups examples (rows) consistently across the views and simultaneously identifies the subset of features (columns) in each view that are associated with the row groups. This mvcluster package includes three such methods. (1) MVSVDL1: multi-view bi-clustering based on singular value decomposition where the left singular vectors are used to identify row clusters and the right singular vectors are used to identify features (columns) for each row cluster. Each singular vector is regularized by the L1 vector norm. (2) MVLRRL0: multi-view bi-clustering based on sparse low rank representation (i.e., matrix approximation) where the decomposed components are regularized by the so-called L0 vector norm (which is not really a vector norm). (3) MVLRRL1: multi-view bi-clustering based on sparse low rank representation (i.e., matrix approximation) where the decomposed components are regularized by the L1 vector norm.
License: GPL (>= 3)
Depends: Rcpp (>= 0.12.0)
LinkingTo: Rcpp, RcppArmadillo
NeedsCompilation: yes
URL: http://www.labhealthinfo.uconn.edu/multi-view-analytics/
Repository: CRAN
Date/Publication: 2016-04-03 16:31:05

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'mvcluster' ...
** package 'mvcluster' successfully unpacked and MD5 sums checked
** libs
g++ -std=c++11 -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include"   -fpic  -g -O2 -c MvBiClus.cpp -o MvBiClus.o
g++ -std=c++11 -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include"   -fpic  -g -O2 -c MvClus.cpp -o MvClus.o
g++ -std=c++11 -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include"   -fpic  -g -O2 -c MvLrmaL0.cpp -o MvLrmaL0.o
g++ -std=c++11 -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include"   -fpic  -g -O2 -c MvLrmaL1.cpp -o MvLrmaL1.o
g++ -std=c++11 -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include"   -fpic  -g -O2 -c MvSsvd.cpp -o MvSsvd.o
g++ -std=c++11 -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include"   -fpic  -g -O2 -c RcppExports.cpp -o RcppExports.o
g++ -std=c++11 -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include"   -fpic  -g -O2 -c cluster.cpp -o cluster.o
g++ -std=c++11 -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include"   -fpic  -g -O2 -c main.cpp -o main.o
g++ -std=c++11 -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include"   -fpic  -g -O2 -c utils.cpp -o utils.o
g++ -std=c++11 -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o mvcluster.so MvBiClus.o MvClus.o MvLrmaL0.o MvLrmaL1.o MvSsvd.o RcppExports.o cluster.o main.o utils.o -L/home/ddbj/local/lib64/R/lib -lRlapack -L/home/ddbj/local/lib64/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/mvcluster/libs
** R
** data
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'mvcluster'
    finding HTML links ... done
    gen                                     html  
    mvlrrl0                                 html  
    mvlrrl1                                 html  
    mvsvdl1                                 html  
    phe                                     html  
    view1                                   html  
    view2                                   html  
** building package indices
** testing if installed package can be loaded
* DONE (mvcluster)
Making 'packages.html' ... done