nat.nblast

Package: nat.nblast
Type: Package
Title: NeuroAnatomy Toolbox ('nat') Extension for Assessing Neuron
Similarity and Clustering
Version: 1.6.2
Author: Greg Jefferis and James Manton
Maintainer: James Manton <ajd.manton@googlemail.com>
Description: Extends package 'nat' (NeuroAnatomy Toolbox) by providing a
collection of NBLAST-related functions.
Depends: R (>= 2.15.1), rgl, methods, nat (>= 1.5.12)
Imports: nabor, dendroextras, plyr, spam
Suggests: bigmemory, ff, testthat, knitr, rglwidget
License: GPL-3
LazyData: yes
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2016-04-26 13:07:39 UTC; jdm
Repository: CRAN
Date/Publication: 2016-04-26 16:50:45

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'nat.nblast' ...
** package 'nat.nblast' successfully unpacked and MD5 sums checked
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'nat.nblast'
    finding HTML links ... done
    NeuriteBlast                            html  
    WeightedNNBasedLinesetMatching          html  
    finding level-2 HTML links ... done

    calc_dists_dotprods                     html  
    calc_prob_mat                           html  
    calc_score_matrix                       html  
    create_scoringmatrix                    html  
    diagonal                                html  
    extract-methods                         html  
    fctraces20                              html  
    fill_in_sparse_score_mat                html  
    fill_pairs_sparse_score_mat             html  
Rd warning: /tmp/Rtmp0Fe3u5/R.INSTALL1def50247bc1/nat.nblast/man/fill_pairs_sparse_score_mat.Rd:26: missing file link 'spam'
    nat.nblast-package                      html  
    nblast                                  html  
    nblast_allbyall                         html  
    neuron_pairs                            html  
    nhclust                                 html  
    plot3d.hclust                           html  
    show_similarity                         html  
    smat.fcwb                               html  
    sparse_score_mat                        html  
    sub_dist_mat                            html  
    sub_score_mat                           html  
    subset.hclust                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (nat.nblast)
Making 'packages.html' ... done